Gene : AT5G27280 A. thaliana TAIR10
Defline:  (1 of 1) PTHR20922//PTHR20922:SF15 - UNCHARACTERIZED // A_TM021B04.14 PROTEIN Genomic Order:  2604
Name:  ? AT5G27280 Secondary Identifier:  ? PAC:19665666
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G27280 0.5kb upstream 0.5kb upstream 1496 true Chr5: 9616986-9618481 Arabidopsis thaliana
AT5G27280 0.5kb upstream 0.5kb upstream 500 false Chr5: 9616986-9617485 Arabidopsis thaliana
AT5G27280 0.5kb downstream 0.5kb downstream 1496 true Chr5: 9617486-9618981 Arabidopsis thaliana
AT5G27280 0.5kb downstream 0.5kb downstream 500 false Chr5: 9618482-9618981 Arabidopsis thaliana
AT5G27280 1.0kb upstream 1.0kb upstream 1996 true Chr5: 9616486-9618481 Arabidopsis thaliana
AT5G27280 1.0kb upstream 1.0kb upstream 1000 false Chr5: 9616486-9617485 Arabidopsis thaliana
AT5G27280 1.0kb downstream 1.0kb downstream 1996 true Chr5: 9617486-9619481 Arabidopsis thaliana
AT5G27280 1.0kb downstream 1.0kb downstream 1000 false Chr5: 9618482-9619481 Arabidopsis thaliana
AT5G27280 2.0kb upstream 2.0kb upstream 2996 true Chr5: 9615486-9618481 Arabidopsis thaliana
AT5G27280 2.0kb upstream 2.0kb upstream 2000 false Chr5: 9615486-9617485 Arabidopsis thaliana
AT5G27280 2.0kb downstream 2.0kb downstream 2996 true Chr5: 9617486-9620481 Arabidopsis thaliana
AT5G27280 2.0kb downstream 2.0kb downstream 2000 false Chr5: 9618482-9620481 Arabidopsis thaliana
AT5G27280 5.0kb upstream 5.0kb upstream 5996 true Chr5: 9612486-9618481 Arabidopsis thaliana
AT5G27280 5.0kb upstream 5.0kb upstream 5000 false Chr5: 9612486-9617485 Arabidopsis thaliana
AT5G27280 5.0kb downstream 5.0kb downstream 5996 true Chr5: 9617486-9623481 Arabidopsis thaliana
AT5G27280 5.0kb downstream 5.0kb downstream 5000 false Chr5: 9618482-9623481 Arabidopsis thaliana
AT5G27280 10.0kb upstream 10.0kb upstream 10996 true Chr5: 9607486-9618481 Arabidopsis thaliana
AT5G27280 10.0kb upstream 10.0kb upstream 10000 false Chr5: 9607486-9617485 Arabidopsis thaliana
AT5G27280 10.0kb downstream 10.0kb downstream 10996 true Chr5: 9617486-9628481 Arabidopsis thaliana
AT5G27280 10.0kb downstream 10.0kb downstream 10000 false Chr5: 9618482-9628481 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377388 5261 Brassicaceae View MSA
123833628 5264 Brassicales-Malvales View MSA
124340271 5266 SBM View MSA
124237439 5268 Malvidae View MSA
124065926 5270 Rosid View MSA
123752849 5271 Pentapetalae View MSA
122787585 5272 Eudicot View MSA
122042389 5273 Angiosperm View MSA
121347257 5274 Embryophyte View MSA
123425918 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 73.873     High  
cufflinks 11.148        
cufflinks 110.942     High  
cufflinks 13.011        
cufflinks 125.031     High High
cufflinks 9.939       Low

0 Strain