Gene : SHM2 A. thaliana TAIR10
Primary Identifier:  ? AT5G26780 Defline:  (1 of 1) PTHR11680:SF12 - SERINE HYDROXYMETHYLTRANSFERASE 2, MITOCHONDRIAL
Genomic Order:  2555 Name:  ? AT5G26780
Secondary Identifier:  ? PAC:19669115
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Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana GLYSYN-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-2161 Arabidopsis thaliana pathologic  
Athaliana PWY-3841 Arabidopsis thaliana pathologic  
Athaliana SER-GLYSYN-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G26780 0.5kb upstream 0.5kb upstream 4462 true Chr5: 9417695-9422156 Arabidopsis thaliana
AT5G26780 0.5kb upstream 0.5kb upstream 500 false Chr5: 9417695-9418194 Arabidopsis thaliana
AT5G26780 0.5kb downstream 0.5kb downstream 4462 true Chr5: 9418195-9422656 Arabidopsis thaliana
AT5G26780 0.5kb downstream 0.5kb downstream 500 false Chr5: 9422157-9422656 Arabidopsis thaliana
AT5G26780 1.0kb upstream 1.0kb upstream 4962 true Chr5: 9417195-9422156 Arabidopsis thaliana
AT5G26780 1.0kb upstream 1.0kb upstream 1000 false Chr5: 9417195-9418194 Arabidopsis thaliana
AT5G26780 1.0kb downstream 1.0kb downstream 4962 true Chr5: 9418195-9423156 Arabidopsis thaliana
AT5G26780 1.0kb downstream 1.0kb downstream 1000 false Chr5: 9422157-9423156 Arabidopsis thaliana
AT5G26780 2.0kb upstream 2.0kb upstream 5962 true Chr5: 9416195-9422156 Arabidopsis thaliana
AT5G26780 2.0kb upstream 2.0kb upstream 2000 false Chr5: 9416195-9418194 Arabidopsis thaliana
AT5G26780 2.0kb downstream 2.0kb downstream 5962 true Chr5: 9418195-9424156 Arabidopsis thaliana
AT5G26780 2.0kb downstream 2.0kb downstream 2000 false Chr5: 9422157-9424156 Arabidopsis thaliana
AT5G26780 5.0kb upstream 5.0kb upstream 8962 true Chr5: 9413195-9422156 Arabidopsis thaliana
AT5G26780 5.0kb upstream 5.0kb upstream 5000 false Chr5: 9413195-9418194 Arabidopsis thaliana
AT5G26780 5.0kb downstream 5.0kb downstream 8962 true Chr5: 9418195-9427156 Arabidopsis thaliana
AT5G26780 5.0kb downstream 5.0kb downstream 5000 false Chr5: 9422157-9427156 Arabidopsis thaliana
AT5G26780 10.0kb upstream 10.0kb upstream 13962 true Chr5: 9408195-9422156 Arabidopsis thaliana
AT5G26780 10.0kb upstream 10.0kb upstream 10000 false Chr5: 9408195-9418194 Arabidopsis thaliana
AT5G26780 10.0kb downstream 10.0kb downstream 13962 true Chr5: 9418195-9432156 Arabidopsis thaliana
AT5G26780 10.0kb downstream 10.0kb downstream 10000 false Chr5: 9422157-9432156 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369702 5261 Brassicaceae View MSA
123827515 5264 Brassicales-Malvales View MSA
124339433 5266 SBM View MSA
124239143 5268 Malvidae View MSA
124064979 5270 Rosid View MSA
123747223 5271 Pentapetalae View MSA
122789073 5272 Eudicot View MSA
122045639 5273 Angiosperm View MSA
121346714 5274 Embryophyte View MSA
123424879 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.115        
cufflinks 10.656        
cufflinks 4.33        
cufflinks 9.41        
cufflinks 3.604       Low
cufflinks 12.456       High

0 Strain