Gene : AT5G35680 A. thaliana TAIR10
Defline:  (1 of 1) PTHR21668//PTHR21668:SF5 - EIF-1A // NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN-RELATED Genomic Order:  2878
Name:  ? AT5G35680 Secondary Identifier:  ? PAC:19671700
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G35680 0.5kb upstream 0.5kb upstream 1593 true Chr5: 13857921-13859513 Arabidopsis thaliana
AT5G35680 0.5kb upstream 0.5kb upstream 500 false Chr5: 13859014-13859513 Arabidopsis thaliana
AT5G35680 0.5kb downstream 0.5kb downstream 1593 true Chr5: 13857421-13859013 Arabidopsis thaliana
AT5G35680 0.5kb downstream 0.5kb downstream 500 false Chr5: 13857421-13857920 Arabidopsis thaliana
AT5G35680 1.0kb upstream 1.0kb upstream 2093 true Chr5: 13857921-13860013 Arabidopsis thaliana
AT5G35680 1.0kb upstream 1.0kb upstream 1000 false Chr5: 13859014-13860013 Arabidopsis thaliana
AT5G35680 1.0kb downstream 1.0kb downstream 2093 true Chr5: 13856921-13859013 Arabidopsis thaliana
AT5G35680 1.0kb downstream 1.0kb downstream 1000 false Chr5: 13856921-13857920 Arabidopsis thaliana
AT5G35680 2.0kb upstream 2.0kb upstream 3093 true Chr5: 13857921-13861013 Arabidopsis thaliana
AT5G35680 2.0kb upstream 2.0kb upstream 2000 false Chr5: 13859014-13861013 Arabidopsis thaliana
AT5G35680 2.0kb downstream 2.0kb downstream 3093 true Chr5: 13855921-13859013 Arabidopsis thaliana
AT5G35680 2.0kb downstream 2.0kb downstream 2000 false Chr5: 13855921-13857920 Arabidopsis thaliana
AT5G35680 5.0kb upstream 5.0kb upstream 6093 true Chr5: 13857921-13864013 Arabidopsis thaliana
AT5G35680 5.0kb upstream 5.0kb upstream 5000 false Chr5: 13859014-13864013 Arabidopsis thaliana
AT5G35680 5.0kb downstream 5.0kb downstream 6093 true Chr5: 13852921-13859013 Arabidopsis thaliana
AT5G35680 5.0kb downstream 5.0kb downstream 5000 false Chr5: 13852921-13857920 Arabidopsis thaliana
AT5G35680 10.0kb upstream 10.0kb upstream 11093 true Chr5: 13857921-13869013 Arabidopsis thaliana
AT5G35680 10.0kb upstream 10.0kb upstream 10000 false Chr5: 13859014-13869013 Arabidopsis thaliana
AT5G35680 10.0kb downstream 10.0kb downstream 11093 true Chr5: 13847921-13859013 Arabidopsis thaliana
AT5G35680 10.0kb downstream 10.0kb downstream 10000 false Chr5: 13847921-13857920 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121792729 5273 Angiosperm View MSA
122331388 5261 Brassicaceae Singleton cluster - no MSA
123772577 5264 Brassicales-Malvales Singleton cluster - no MSA
124271087 5266 SBM Singleton cluster - no MSA
124127114 5268 Malvidae Singleton cluster - no MSA
123855986 5270 Rosid Singleton cluster - no MSA
123755724 5271 Pentapetalae View MSA
122798451 5272 Eudicot View MSA
121063932 5274 Embryophyte View MSA
123103635 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.787        
cufflinks 25.122        
cufflinks 19.658       Low
cufflinks 23.606        
cufflinks 20.471       Low
cufflinks 25.85       High

0 Strain