Gene : PAA1 A. thaliana TAIR10
Primary Identifier:  ? AT5G35590 Defline:  (1 of 2) K02730 - 20S proteasome subunit alpha 1 (PSMA6)
Genomic Order:  2867 Name:  ? AT5G35590
Secondary Identifier:  ? PAC:19666663
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G35590 0.5kb upstream 0.5kb upstream 3186 true Chr5: 13765138-13768323 Arabidopsis thaliana
AT5G35590 0.5kb upstream 0.5kb upstream 500 false Chr5: 13767824-13768323 Arabidopsis thaliana
AT5G35590 0.5kb downstream 0.5kb downstream 3186 true Chr5: 13764638-13767823 Arabidopsis thaliana
AT5G35590 0.5kb downstream 0.5kb downstream 500 false Chr5: 13764638-13765137 Arabidopsis thaliana
AT5G35590 1.0kb upstream 1.0kb upstream 3686 true Chr5: 13765138-13768823 Arabidopsis thaliana
AT5G35590 1.0kb upstream 1.0kb upstream 1000 false Chr5: 13767824-13768823 Arabidopsis thaliana
AT5G35590 1.0kb downstream 1.0kb downstream 3686 true Chr5: 13764138-13767823 Arabidopsis thaliana
AT5G35590 1.0kb downstream 1.0kb downstream 1000 false Chr5: 13764138-13765137 Arabidopsis thaliana
AT5G35590 2.0kb upstream 2.0kb upstream 4686 true Chr5: 13765138-13769823 Arabidopsis thaliana
AT5G35590 2.0kb upstream 2.0kb upstream 2000 false Chr5: 13767824-13769823 Arabidopsis thaliana
AT5G35590 2.0kb downstream 2.0kb downstream 4686 true Chr5: 13763138-13767823 Arabidopsis thaliana
AT5G35590 2.0kb downstream 2.0kb downstream 2000 false Chr5: 13763138-13765137 Arabidopsis thaliana
AT5G35590 5.0kb upstream 5.0kb upstream 7686 true Chr5: 13765138-13772823 Arabidopsis thaliana
AT5G35590 5.0kb upstream 5.0kb upstream 5000 false Chr5: 13767824-13772823 Arabidopsis thaliana
AT5G35590 5.0kb downstream 5.0kb downstream 7686 true Chr5: 13760138-13767823 Arabidopsis thaliana
AT5G35590 5.0kb downstream 5.0kb downstream 5000 false Chr5: 13760138-13765137 Arabidopsis thaliana
AT5G35590 10.0kb upstream 10.0kb upstream 12686 true Chr5: 13765138-13777823 Arabidopsis thaliana
AT5G35590 10.0kb upstream 10.0kb upstream 10000 false Chr5: 13767824-13777823 Arabidopsis thaliana
AT5G35590 10.0kb downstream 10.0kb downstream 12686 true Chr5: 13755138-13767823 Arabidopsis thaliana
AT5G35590 10.0kb downstream 10.0kb downstream 10000 false Chr5: 13755138-13765137 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041382 5273 Angiosperm View MSA
122379560 5261 Brassicaceae View MSA
123833032 5264 Brassicales-Malvales View MSA
124344887 5266 SBM View MSA
124251564 5268 Malvidae View MSA
124061285 5270 Rosid View MSA
123742081 5271 Pentapetalae View MSA
122789367 5272 Eudicot View MSA
121345997 5274 Embryophyte View MSA
123424581 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.103     High  
cufflinks 35.476     High  
cufflinks 28.683     High Low
cufflinks 37.7     High  
cufflinks 30.766     High  
cufflinks 41.635     High High

0 Strain