Gene : LSP1 A. thaliana TAIR10
Primary Identifier:  ? AT5G35620 Defline:  (1 of 1) PTHR11960//PTHR11960:SF12 - EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED // EUKARYOTIC TRANSLATION INITIATION FACTOR ISOFORM 4E
Genomic Order:  2872 Name:  ? AT5G35620
Secondary Identifier:  ? PAC:19671805
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Expression

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5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G35620 0.5kb upstream 0.5kb upstream 2187 true Chr5: 13824705-13826891 Arabidopsis thaliana
AT5G35620 0.5kb upstream 0.5kb upstream 500 false Chr5: 13826392-13826891 Arabidopsis thaliana
AT5G35620 0.5kb downstream 0.5kb downstream 2187 true Chr5: 13824205-13826391 Arabidopsis thaliana
AT5G35620 0.5kb downstream 0.5kb downstream 500 false Chr5: 13824205-13824704 Arabidopsis thaliana
AT5G35620 1.0kb upstream 1.0kb upstream 2687 true Chr5: 13824705-13827391 Arabidopsis thaliana
AT5G35620 1.0kb upstream 1.0kb upstream 1000 false Chr5: 13826392-13827391 Arabidopsis thaliana
AT5G35620 1.0kb downstream 1.0kb downstream 2687 true Chr5: 13823705-13826391 Arabidopsis thaliana
AT5G35620 1.0kb downstream 1.0kb downstream 1000 false Chr5: 13823705-13824704 Arabidopsis thaliana
AT5G35620 2.0kb upstream 2.0kb upstream 3687 true Chr5: 13824705-13828391 Arabidopsis thaliana
AT5G35620 2.0kb upstream 2.0kb upstream 2000 false Chr5: 13826392-13828391 Arabidopsis thaliana
AT5G35620 2.0kb downstream 2.0kb downstream 3687 true Chr5: 13822705-13826391 Arabidopsis thaliana
AT5G35620 2.0kb downstream 2.0kb downstream 2000 false Chr5: 13822705-13824704 Arabidopsis thaliana
AT5G35620 5.0kb upstream 5.0kb upstream 6687 true Chr5: 13824705-13831391 Arabidopsis thaliana
AT5G35620 5.0kb upstream 5.0kb upstream 5000 false Chr5: 13826392-13831391 Arabidopsis thaliana
AT5G35620 5.0kb downstream 5.0kb downstream 6687 true Chr5: 13819705-13826391 Arabidopsis thaliana
AT5G35620 5.0kb downstream 5.0kb downstream 5000 false Chr5: 13819705-13824704 Arabidopsis thaliana
AT5G35620 10.0kb upstream 10.0kb upstream 11687 true Chr5: 13824705-13836391 Arabidopsis thaliana
AT5G35620 10.0kb upstream 10.0kb upstream 10000 false Chr5: 13826392-13836391 Arabidopsis thaliana
AT5G35620 10.0kb downstream 10.0kb downstream 11687 true Chr5: 13814705-13826391 Arabidopsis thaliana
AT5G35620 10.0kb downstream 10.0kb downstream 10000 false Chr5: 13814705-13824704 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366493 5261 Brassicaceae View MSA
123830108 5264 Brassicales-Malvales View MSA
124345798 5266 SBM View MSA
124236913 5268 Malvidae View MSA
124067941 5270 Rosid View MSA
123737003 5271 Pentapetalae View MSA
122788011 5272 Eudicot View MSA
122048910 5273 Angiosperm View MSA
121311166 5274 Embryophyte View MSA
123428039 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.982        
cufflinks 15.203        
cufflinks 12.351        
cufflinks 16.783        
cufflinks 10.088       Low
cufflinks 20.541       High

0 Strain