Gene : GUS3 A. thaliana TAIR10
Primary Identifier:  ? AT5G34940 Defline:  (1 of 1) K07964 - heparanase 1 (HPSE)
Genomic Order:  2819 Name:  ? AT5G34940
Secondary Identifier:  ? PAC:19666918
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7213 Arabidopsis thaliana pathologic  
Athaliana PWY-7214 Arabidopsis thaliana pathologic  
Athaliana PWY-7445 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G34940 0.5kb upstream 0.5kb upstream 3511 true Chr5: 13235829-13239339 Arabidopsis thaliana
AT5G34940 0.5kb upstream 0.5kb upstream 500 false Chr5: 13238840-13239339 Arabidopsis thaliana
AT5G34940 0.5kb downstream 0.5kb downstream 3511 true Chr5: 13235329-13238839 Arabidopsis thaliana
AT5G34940 0.5kb downstream 0.5kb downstream 500 false Chr5: 13235329-13235828 Arabidopsis thaliana
AT5G34940 1.0kb upstream 1.0kb upstream 4011 true Chr5: 13235829-13239839 Arabidopsis thaliana
AT5G34940 1.0kb upstream 1.0kb upstream 1000 false Chr5: 13238840-13239839 Arabidopsis thaliana
AT5G34940 1.0kb downstream 1.0kb downstream 4011 true Chr5: 13234829-13238839 Arabidopsis thaliana
AT5G34940 1.0kb downstream 1.0kb downstream 1000 false Chr5: 13234829-13235828 Arabidopsis thaliana
AT5G34940 2.0kb upstream 2.0kb upstream 5011 true Chr5: 13235829-13240839 Arabidopsis thaliana
AT5G34940 2.0kb upstream 2.0kb upstream 2000 false Chr5: 13238840-13240839 Arabidopsis thaliana
AT5G34940 2.0kb downstream 2.0kb downstream 5011 true Chr5: 13233829-13238839 Arabidopsis thaliana
AT5G34940 2.0kb downstream 2.0kb downstream 2000 false Chr5: 13233829-13235828 Arabidopsis thaliana
AT5G34940 5.0kb upstream 5.0kb upstream 8011 true Chr5: 13235829-13243839 Arabidopsis thaliana
AT5G34940 5.0kb upstream 5.0kb upstream 5000 false Chr5: 13238840-13243839 Arabidopsis thaliana
AT5G34940 5.0kb downstream 5.0kb downstream 8011 true Chr5: 13230829-13238839 Arabidopsis thaliana
AT5G34940 5.0kb downstream 5.0kb downstream 5000 false Chr5: 13230829-13235828 Arabidopsis thaliana
AT5G34940 10.0kb upstream 10.0kb upstream 13011 true Chr5: 13235829-13248839 Arabidopsis thaliana
AT5G34940 10.0kb upstream 10.0kb upstream 10000 false Chr5: 13238840-13248839 Arabidopsis thaliana
AT5G34940 10.0kb downstream 10.0kb downstream 13011 true Chr5: 13225829-13238839 Arabidopsis thaliana
AT5G34940 10.0kb downstream 10.0kb downstream 10000 false Chr5: 13225829-13235828 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374580 5261 Brassicaceae View MSA
123834676 5264 Brassicales-Malvales View MSA
124339213 5266 SBM View MSA
124244974 5268 Malvidae View MSA
124063624 5270 Rosid View MSA
123745490 5271 Pentapetalae View MSA
122791250 5272 Eudicot View MSA
122042729 5273 Angiosperm View MSA
121348264 5274 Embryophyte View MSA
123380798 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.109        
cufflinks 2.476        
cufflinks 0.539       Low
cufflinks 2.396        
cufflinks 0.65        
cufflinks 4.013       High

0 Strain