Gene : AT5G30495 A. thaliana TAIR10
Defline:  (1 of 2) PTHR21686:SF12 - DEOXYNUCLEOTIDYLTRANSFERASE TERMINAL-INTERACTING PROTEIN 2 Genomic Order:  2774
Name:  ? AT5G30495 Secondary Identifier:  ? PAC:19667888
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G30495 0.5kb upstream 0.5kb upstream 2062 true Chr5: 11379501-11381562 Arabidopsis thaliana
AT5G30495 0.5kb upstream 0.5kb upstream 500 false Chr5: 11379501-11380000 Arabidopsis thaliana
AT5G30495 0.5kb downstream 0.5kb downstream 2062 true Chr5: 11380001-11382062 Arabidopsis thaliana
AT5G30495 0.5kb downstream 0.5kb downstream 500 false Chr5: 11381563-11382062 Arabidopsis thaliana
AT5G30495 1.0kb upstream 1.0kb upstream 2562 true Chr5: 11379001-11381562 Arabidopsis thaliana
AT5G30495 1.0kb upstream 1.0kb upstream 1000 false Chr5: 11379001-11380000 Arabidopsis thaliana
AT5G30495 1.0kb downstream 1.0kb downstream 2562 true Chr5: 11380001-11382562 Arabidopsis thaliana
AT5G30495 1.0kb downstream 1.0kb downstream 1000 false Chr5: 11381563-11382562 Arabidopsis thaliana
AT5G30495 2.0kb upstream 2.0kb upstream 3562 true Chr5: 11378001-11381562 Arabidopsis thaliana
AT5G30495 2.0kb upstream 2.0kb upstream 2000 false Chr5: 11378001-11380000 Arabidopsis thaliana
AT5G30495 2.0kb downstream 2.0kb downstream 3562 true Chr5: 11380001-11383562 Arabidopsis thaliana
AT5G30495 2.0kb downstream 2.0kb downstream 2000 false Chr5: 11381563-11383562 Arabidopsis thaliana
AT5G30495 5.0kb upstream 5.0kb upstream 6562 true Chr5: 11375001-11381562 Arabidopsis thaliana
AT5G30495 5.0kb upstream 5.0kb upstream 5000 false Chr5: 11375001-11380000 Arabidopsis thaliana
AT5G30495 5.0kb downstream 5.0kb downstream 6562 true Chr5: 11380001-11386562 Arabidopsis thaliana
AT5G30495 5.0kb downstream 5.0kb downstream 5000 false Chr5: 11381563-11386562 Arabidopsis thaliana
AT5G30495 10.0kb upstream 10.0kb upstream 11562 true Chr5: 11370001-11381562 Arabidopsis thaliana
AT5G30495 10.0kb upstream 10.0kb upstream 10000 false Chr5: 11370001-11380000 Arabidopsis thaliana
AT5G30495 10.0kb downstream 10.0kb downstream 11562 true Chr5: 11380001-11391562 Arabidopsis thaliana
AT5G30495 10.0kb downstream 10.0kb downstream 10000 false Chr5: 11381563-11391562 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028901 5273 Angiosperm View MSA
122369333 5261 Brassicaceae View MSA
123827991 5264 Brassicales-Malvales View MSA
124343269 5266 SBM View MSA
124245117 5268 Malvidae View MSA
124072878 5270 Rosid View MSA
123738912 5271 Pentapetalae View MSA
122787489 5272 Eudicot View MSA
121349839 5274 Embryophyte View MSA
123427981 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.626        
cufflinks 4.289        
cufflinks 5.159       High
cufflinks 4.482        
cufflinks 4.436        
cufflinks 4.179       Low

0 Strain