Gene : AT5G30500 A. thaliana TAIR10
Defline:  (1 of 3) PTHR11183:SF33 - GALACTINOL SYNTHASE 1-RELATED Genomic Order:  2777
Name:  ? AT5G30500 Secondary Identifier:  ? PAC:19666569
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5337 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G30500 0.5kb upstream 0.5kb upstream 2082 true Chr5: 11614845-11616926 Arabidopsis thaliana
AT5G30500 0.5kb upstream 0.5kb upstream 500 false Chr5: 11614845-11615344 Arabidopsis thaliana
AT5G30500 0.5kb downstream 0.5kb downstream 2082 true Chr5: 11615345-11617426 Arabidopsis thaliana
AT5G30500 0.5kb downstream 0.5kb downstream 500 false Chr5: 11616927-11617426 Arabidopsis thaliana
AT5G30500 1.0kb upstream 1.0kb upstream 2582 true Chr5: 11614345-11616926 Arabidopsis thaliana
AT5G30500 1.0kb upstream 1.0kb upstream 1000 false Chr5: 11614345-11615344 Arabidopsis thaliana
AT5G30500 1.0kb downstream 1.0kb downstream 2582 true Chr5: 11615345-11617926 Arabidopsis thaliana
AT5G30500 1.0kb downstream 1.0kb downstream 1000 false Chr5: 11616927-11617926 Arabidopsis thaliana
AT5G30500 2.0kb upstream 2.0kb upstream 3582 true Chr5: 11613345-11616926 Arabidopsis thaliana
AT5G30500 2.0kb upstream 2.0kb upstream 2000 false Chr5: 11613345-11615344 Arabidopsis thaliana
AT5G30500 2.0kb downstream 2.0kb downstream 3582 true Chr5: 11615345-11618926 Arabidopsis thaliana
AT5G30500 2.0kb downstream 2.0kb downstream 2000 false Chr5: 11616927-11618926 Arabidopsis thaliana
AT5G30500 5.0kb upstream 5.0kb upstream 6582 true Chr5: 11610345-11616926 Arabidopsis thaliana
AT5G30500 5.0kb upstream 5.0kb upstream 5000 false Chr5: 11610345-11615344 Arabidopsis thaliana
AT5G30500 5.0kb downstream 5.0kb downstream 6582 true Chr5: 11615345-11621926 Arabidopsis thaliana
AT5G30500 5.0kb downstream 5.0kb downstream 5000 false Chr5: 11616927-11621926 Arabidopsis thaliana
AT5G30500 10.0kb upstream 10.0kb upstream 11582 true Chr5: 11605345-11616926 Arabidopsis thaliana
AT5G30500 10.0kb upstream 10.0kb upstream 10000 false Chr5: 11605345-11615344 Arabidopsis thaliana
AT5G30500 10.0kb downstream 10.0kb downstream 11582 true Chr5: 11615345-11626926 Arabidopsis thaliana
AT5G30500 10.0kb downstream 10.0kb downstream 10000 false Chr5: 11616927-11626926 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376753 5261 Brassicaceae View MSA
123842385 5264 Brassicales-Malvales View MSA
124323451 5266 SBM View MSA
124256963 5268 Malvidae View MSA
124072040 5270 Rosid View MSA
123746069 5271 Pentapetalae View MSA
122793646 5272 Eudicot View MSA
122046900 5273 Angiosperm View MSA
121310671 5274 Embryophyte View MSA
123348097 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.044     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain