Gene : AT5G28830 A. thaliana TAIR10
Defline:  calcium-binding EF hand family protein Genomic Order:  2751
Name:  ? AT5G28830 Secondary Identifier:  ? PAC:19666756
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G28830 0.5kb upstream 0.5kb upstream 2378 true Chr5: 10856291-10858668 Arabidopsis thaliana
AT5G28830 0.5kb upstream 0.5kb upstream 500 false Chr5: 10856291-10856790 Arabidopsis thaliana
AT5G28830 0.5kb downstream 0.5kb downstream 2378 true Chr5: 10856791-10859168 Arabidopsis thaliana
AT5G28830 0.5kb downstream 0.5kb downstream 500 false Chr5: 10858669-10859168 Arabidopsis thaliana
AT5G28830 1.0kb upstream 1.0kb upstream 2878 true Chr5: 10855791-10858668 Arabidopsis thaliana
AT5G28830 1.0kb upstream 1.0kb upstream 1000 false Chr5: 10855791-10856790 Arabidopsis thaliana
AT5G28830 1.0kb downstream 1.0kb downstream 2878 true Chr5: 10856791-10859668 Arabidopsis thaliana
AT5G28830 1.0kb downstream 1.0kb downstream 1000 false Chr5: 10858669-10859668 Arabidopsis thaliana
AT5G28830 2.0kb upstream 2.0kb upstream 3878 true Chr5: 10854791-10858668 Arabidopsis thaliana
AT5G28830 2.0kb upstream 2.0kb upstream 2000 false Chr5: 10854791-10856790 Arabidopsis thaliana
AT5G28830 2.0kb downstream 2.0kb downstream 3878 true Chr5: 10856791-10860668 Arabidopsis thaliana
AT5G28830 2.0kb downstream 2.0kb downstream 2000 false Chr5: 10858669-10860668 Arabidopsis thaliana
AT5G28830 5.0kb upstream 5.0kb upstream 6878 true Chr5: 10851791-10858668 Arabidopsis thaliana
AT5G28830 5.0kb upstream 5.0kb upstream 5000 false Chr5: 10851791-10856790 Arabidopsis thaliana
AT5G28830 5.0kb downstream 5.0kb downstream 6878 true Chr5: 10856791-10863668 Arabidopsis thaliana
AT5G28830 5.0kb downstream 5.0kb downstream 5000 false Chr5: 10858669-10863668 Arabidopsis thaliana
AT5G28830 10.0kb upstream 10.0kb upstream 11878 true Chr5: 10846791-10858668 Arabidopsis thaliana
AT5G28830 10.0kb upstream 10.0kb upstream 10000 false Chr5: 10846791-10856790 Arabidopsis thaliana
AT5G28830 10.0kb downstream 10.0kb downstream 11878 true Chr5: 10856791-10868668 Arabidopsis thaliana
AT5G28830 10.0kb downstream 10.0kb downstream 10000 false Chr5: 10858669-10868668 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373274 5261 Brassicaceae View MSA
123829747 5264 Brassicales-Malvales View MSA
124342711 5266 SBM View MSA
124238562 5268 Malvidae View MSA
124064185 5270 Rosid View MSA
123739646 5271 Pentapetalae View MSA
122789381 5272 Eudicot View MSA
122043203 5273 Angiosperm View MSA
121346779 5274 Embryophyte View MSA
123380443 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.02        
cufflinks 10.549        
cufflinks 8.155       Low
cufflinks 12.455        
cufflinks 13.673       High
cufflinks 9.385        

0 Strain