Gene : AT5G38250 A. thaliana TAIR10
Defline:  (1 of 2) PF07714//PF13947 - Protein tyrosine kinase (Pkinase_Tyr) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) Genomic Order:  3120
Name:  ? AT5G38250 Secondary Identifier:  ? PAC:19666823
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7409 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G38250 0.5kb upstream 0.5kb upstream 2567 true Chr5: 15280643-15283209 Arabidopsis thaliana
AT5G38250 0.5kb upstream 0.5kb upstream 500 false Chr5: 15282710-15283209 Arabidopsis thaliana
AT5G38250 0.5kb downstream 0.5kb downstream 2567 true Chr5: 15280143-15282709 Arabidopsis thaliana
AT5G38250 0.5kb downstream 0.5kb downstream 500 false Chr5: 15280143-15280642 Arabidopsis thaliana
AT5G38250 1.0kb upstream 1.0kb upstream 3067 true Chr5: 15280643-15283709 Arabidopsis thaliana
AT5G38250 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15282710-15283709 Arabidopsis thaliana
AT5G38250 1.0kb downstream 1.0kb downstream 3067 true Chr5: 15279643-15282709 Arabidopsis thaliana
AT5G38250 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15279643-15280642 Arabidopsis thaliana
AT5G38250 2.0kb upstream 2.0kb upstream 4067 true Chr5: 15280643-15284709 Arabidopsis thaliana
AT5G38250 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15282710-15284709 Arabidopsis thaliana
AT5G38250 2.0kb downstream 2.0kb downstream 4067 true Chr5: 15278643-15282709 Arabidopsis thaliana
AT5G38250 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15278643-15280642 Arabidopsis thaliana
AT5G38250 5.0kb upstream 5.0kb upstream 7067 true Chr5: 15280643-15287709 Arabidopsis thaliana
AT5G38250 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15282710-15287709 Arabidopsis thaliana
AT5G38250 5.0kb downstream 5.0kb downstream 7067 true Chr5: 15275643-15282709 Arabidopsis thaliana
AT5G38250 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15275643-15280642 Arabidopsis thaliana
AT5G38250 10.0kb upstream 10.0kb upstream 12067 true Chr5: 15280643-15292709 Arabidopsis thaliana
AT5G38250 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15282710-15292709 Arabidopsis thaliana
AT5G38250 10.0kb downstream 10.0kb downstream 12067 true Chr5: 15270643-15282709 Arabidopsis thaliana
AT5G38250 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15270643-15280642 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378696 5261 Brassicaceae View MSA
123841678 5264 Brassicales-Malvales View MSA
124350842 5266 SBM View MSA
124254633 5268 Malvidae View MSA
124074937 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.344       High
cufflinks 0.007     Low Low
cufflinks 0.293        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.724        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain