Gene : TCH2 A. thaliana TAIR10
Primary Identifier:  ? AT5G37770 Defline:  (1 of 7) PTHR10891:SF573 - CALCIUM-BINDING PROTEIN CML24-RELATED
Genomic Order:  3072 Name:  ? AT5G37770
Secondary Identifier:  ? PAC:19673245
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G37770 0.5kb upstream 0.5kb upstream 1266 true Chr5: 14998854-15000119 Arabidopsis thaliana
AT5G37770 0.5kb upstream 0.5kb upstream 500 false Chr5: 14999620-15000119 Arabidopsis thaliana
AT5G37770 0.5kb downstream 0.5kb downstream 1266 true Chr5: 14998354-14999619 Arabidopsis thaliana
AT5G37770 0.5kb downstream 0.5kb downstream 500 false Chr5: 14998354-14998853 Arabidopsis thaliana
AT5G37770 1.0kb upstream 1.0kb upstream 1766 true Chr5: 14998854-15000619 Arabidopsis thaliana
AT5G37770 1.0kb upstream 1.0kb upstream 1000 false Chr5: 14999620-15000619 Arabidopsis thaliana
AT5G37770 1.0kb downstream 1.0kb downstream 1766 true Chr5: 14997854-14999619 Arabidopsis thaliana
AT5G37770 1.0kb downstream 1.0kb downstream 1000 false Chr5: 14997854-14998853 Arabidopsis thaliana
AT5G37770 2.0kb upstream 2.0kb upstream 2766 true Chr5: 14998854-15001619 Arabidopsis thaliana
AT5G37770 2.0kb upstream 2.0kb upstream 2000 false Chr5: 14999620-15001619 Arabidopsis thaliana
AT5G37770 2.0kb downstream 2.0kb downstream 2766 true Chr5: 14996854-14999619 Arabidopsis thaliana
AT5G37770 2.0kb downstream 2.0kb downstream 2000 false Chr5: 14996854-14998853 Arabidopsis thaliana
AT5G37770 5.0kb upstream 5.0kb upstream 5766 true Chr5: 14998854-15004619 Arabidopsis thaliana
AT5G37770 5.0kb upstream 5.0kb upstream 5000 false Chr5: 14999620-15004619 Arabidopsis thaliana
AT5G37770 5.0kb downstream 5.0kb downstream 5766 true Chr5: 14993854-14999619 Arabidopsis thaliana
AT5G37770 5.0kb downstream 5.0kb downstream 5000 false Chr5: 14993854-14998853 Arabidopsis thaliana
AT5G37770 10.0kb upstream 10.0kb upstream 10766 true Chr5: 14998854-15009619 Arabidopsis thaliana
AT5G37770 10.0kb upstream 10.0kb upstream 10000 false Chr5: 14999620-15009619 Arabidopsis thaliana
AT5G37770 10.0kb downstream 10.0kb downstream 10766 true Chr5: 14988854-14999619 Arabidopsis thaliana
AT5G37770 10.0kb downstream 10.0kb downstream 10000 false Chr5: 14988854-14998853 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380684 5261 Brassicaceae View MSA
123834188 5264 Brassicales-Malvales View MSA
124337712 5266 SBM View MSA
124239227 5268 Malvidae View MSA
124061812 5270 Rosid View MSA
123752217 5271 Pentapetalae View MSA
122794850 5272 Eudicot View MSA
122047176 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121350734 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 80.566     High  
cufflinks 463.646     High High
cufflinks 110.535     High  
cufflinks 309.97     High  
cufflinks 44.894     High Low
cufflinks 451.862     High  

0 Strain