Gene : CIP4 A. thaliana TAIR10
Primary Identifier:  ? AT5G37190 Defline:  (1 of 3) PTHR13164//PTHR13164:SF7 - CALICYLIN BINDING PROTEIN // COP1-INTERACTING PROTEIN 4-RELATED
Genomic Order:  3011 Name:  ? AT5G37190
Secondary Identifier:  ? PAC:19670247
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G37190 0.5kb upstream 0.5kb upstream 4051 true Chr5: 14723144-14727194 Arabidopsis thaliana
AT5G37190 0.5kb upstream 0.5kb upstream 500 false Chr5: 14726695-14727194 Arabidopsis thaliana
AT5G37190 0.5kb downstream 0.5kb downstream 4051 true Chr5: 14722644-14726694 Arabidopsis thaliana
AT5G37190 0.5kb downstream 0.5kb downstream 500 false Chr5: 14722644-14723143 Arabidopsis thaliana
AT5G37190 1.0kb upstream 1.0kb upstream 4551 true Chr5: 14723144-14727694 Arabidopsis thaliana
AT5G37190 1.0kb upstream 1.0kb upstream 1000 false Chr5: 14726695-14727694 Arabidopsis thaliana
AT5G37190 1.0kb downstream 1.0kb downstream 4551 true Chr5: 14722144-14726694 Arabidopsis thaliana
AT5G37190 1.0kb downstream 1.0kb downstream 1000 false Chr5: 14722144-14723143 Arabidopsis thaliana
AT5G37190 2.0kb upstream 2.0kb upstream 5551 true Chr5: 14723144-14728694 Arabidopsis thaliana
AT5G37190 2.0kb upstream 2.0kb upstream 2000 false Chr5: 14726695-14728694 Arabidopsis thaliana
AT5G37190 2.0kb downstream 2.0kb downstream 5551 true Chr5: 14721144-14726694 Arabidopsis thaliana
AT5G37190 2.0kb downstream 2.0kb downstream 2000 false Chr5: 14721144-14723143 Arabidopsis thaliana
AT5G37190 5.0kb upstream 5.0kb upstream 8551 true Chr5: 14723144-14731694 Arabidopsis thaliana
AT5G37190 5.0kb upstream 5.0kb upstream 5000 false Chr5: 14726695-14731694 Arabidopsis thaliana
AT5G37190 5.0kb downstream 5.0kb downstream 8551 true Chr5: 14718144-14726694 Arabidopsis thaliana
AT5G37190 5.0kb downstream 5.0kb downstream 5000 false Chr5: 14718144-14723143 Arabidopsis thaliana
AT5G37190 10.0kb upstream 10.0kb upstream 13551 true Chr5: 14723144-14736694 Arabidopsis thaliana
AT5G37190 10.0kb upstream 10.0kb upstream 10000 false Chr5: 14726695-14736694 Arabidopsis thaliana
AT5G37190 10.0kb downstream 10.0kb downstream 13551 true Chr5: 14713144-14726694 Arabidopsis thaliana
AT5G37190 10.0kb downstream 10.0kb downstream 10000 false Chr5: 14713144-14723143 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122331277 5261 Brassicaceae Singleton cluster - no MSA
123772474 5264 Brassicales-Malvales Singleton cluster - no MSA
124270987 5266 SBM Singleton cluster - no MSA
124248012 5268 Malvidae View MSA
124069381 5270 Rosid View MSA
123743976 5271 Pentapetalae View MSA
122793189 5272 Eudicot View MSA
122042859 5273 Angiosperm View MSA
121310036 5274 Embryophyte View MSA
123347639 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.664        
cufflinks 7.343        
cufflinks 5.974        
cufflinks 7.447       High
cufflinks 5.417       Low
cufflinks 6.655        

0 Strain