Gene : AT5G40670 A. thaliana TAIR10
Defline:  (1 of 1) K12386 - cystinosin (CTNS) Genomic Order:  3378
Name:  ? AT5G40670 Secondary Identifier:  ? PAC:19667670
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G40670 0.5kb upstream 0.5kb upstream 2583 true Chr5: 16285211-16287793 Arabidopsis thaliana
AT5G40670 0.5kb upstream 0.5kb upstream 500 false Chr5: 16285211-16285710 Arabidopsis thaliana
AT5G40670 0.5kb downstream 0.5kb downstream 2583 true Chr5: 16285711-16288293 Arabidopsis thaliana
AT5G40670 0.5kb downstream 0.5kb downstream 500 false Chr5: 16287794-16288293 Arabidopsis thaliana
AT5G40670 1.0kb upstream 1.0kb upstream 3083 true Chr5: 16284711-16287793 Arabidopsis thaliana
AT5G40670 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16284711-16285710 Arabidopsis thaliana
AT5G40670 1.0kb downstream 1.0kb downstream 3083 true Chr5: 16285711-16288793 Arabidopsis thaliana
AT5G40670 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16287794-16288793 Arabidopsis thaliana
AT5G40670 2.0kb upstream 2.0kb upstream 4083 true Chr5: 16283711-16287793 Arabidopsis thaliana
AT5G40670 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16283711-16285710 Arabidopsis thaliana
AT5G40670 2.0kb downstream 2.0kb downstream 4083 true Chr5: 16285711-16289793 Arabidopsis thaliana
AT5G40670 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16287794-16289793 Arabidopsis thaliana
AT5G40670 5.0kb upstream 5.0kb upstream 7083 true Chr5: 16280711-16287793 Arabidopsis thaliana
AT5G40670 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16280711-16285710 Arabidopsis thaliana
AT5G40670 5.0kb downstream 5.0kb downstream 7083 true Chr5: 16285711-16292793 Arabidopsis thaliana
AT5G40670 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16287794-16292793 Arabidopsis thaliana
AT5G40670 10.0kb upstream 10.0kb upstream 12083 true Chr5: 16275711-16287793 Arabidopsis thaliana
AT5G40670 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16275711-16285710 Arabidopsis thaliana
AT5G40670 10.0kb downstream 10.0kb downstream 12083 true Chr5: 16285711-16297793 Arabidopsis thaliana
AT5G40670 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16287794-16297793 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372100 5261 Brassicaceae View MSA
123841256 5264 Brassicales-Malvales View MSA
124344656 5266 SBM View MSA
124237690 5268 Malvidae View MSA
124063559 5270 Rosid View MSA
123752283 5271 Pentapetalae View MSA
122786294 5272 Eudicot View MSA
122043856 5273 Angiosperm View MSA
121344453 5274 Embryophyte View MSA
123380048 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.795     High High
cufflinks 12.945       Low
cufflinks 21.488        
cufflinks 14.766        
cufflinks 26.433     High  
cufflinks 14.14        

0 Strain