Gene : AT5G40645 A. thaliana TAIR10
Defline:  (1 of 11) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  3375
Name:  ? AT5G40645 Secondary Identifier:  ? PAC:19668195
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G40645 0.5kb upstream 0.5kb upstream 1190 true Chr5: 16280283-16281472 Arabidopsis thaliana
AT5G40645 0.5kb upstream 0.5kb upstream 500 false Chr5: 16280973-16281472 Arabidopsis thaliana
AT5G40645 0.5kb downstream 0.5kb downstream 1190 true Chr5: 16279783-16280972 Arabidopsis thaliana
AT5G40645 0.5kb downstream 0.5kb downstream 500 false Chr5: 16279783-16280282 Arabidopsis thaliana
AT5G40645 1.0kb upstream 1.0kb upstream 1690 true Chr5: 16280283-16281972 Arabidopsis thaliana
AT5G40645 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16280973-16281972 Arabidopsis thaliana
AT5G40645 1.0kb downstream 1.0kb downstream 1690 true Chr5: 16279283-16280972 Arabidopsis thaliana
AT5G40645 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16279283-16280282 Arabidopsis thaliana
AT5G40645 2.0kb upstream 2.0kb upstream 2690 true Chr5: 16280283-16282972 Arabidopsis thaliana
AT5G40645 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16280973-16282972 Arabidopsis thaliana
AT5G40645 2.0kb downstream 2.0kb downstream 2690 true Chr5: 16278283-16280972 Arabidopsis thaliana
AT5G40645 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16278283-16280282 Arabidopsis thaliana
AT5G40645 5.0kb upstream 5.0kb upstream 5690 true Chr5: 16280283-16285972 Arabidopsis thaliana
AT5G40645 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16280973-16285972 Arabidopsis thaliana
AT5G40645 5.0kb downstream 5.0kb downstream 5690 true Chr5: 16275283-16280972 Arabidopsis thaliana
AT5G40645 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16275283-16280282 Arabidopsis thaliana
AT5G40645 10.0kb upstream 10.0kb upstream 10690 true Chr5: 16280283-16290972 Arabidopsis thaliana
AT5G40645 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16280973-16290972 Arabidopsis thaliana
AT5G40645 10.0kb downstream 10.0kb downstream 10690 true Chr5: 16270283-16280972 Arabidopsis thaliana
AT5G40645 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16270283-16280282 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376328 5261 Brassicaceae View MSA
123839959 5264 Brassicales-Malvales View MSA
124345918 5266 SBM View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.019     Low Low
cufflinks 1.528        
cufflinks 0.021     Low  
cufflinks 2.665       High
cufflinks 0.046     Low  
cufflinks 0.871        

0 Strain