Gene : AT5G40520 A. thaliana TAIR10
Genomic Order:  3361 Name:  ? AT5G40520
Secondary Identifier:  ? PAC:19671152
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G40520 0.5kb upstream 0.5kb upstream 3563 true Chr5: 16231254-16234816 Arabidopsis thaliana
AT5G40520 0.5kb upstream 0.5kb upstream 500 false Chr5: 16234317-16234816 Arabidopsis thaliana
AT5G40520 0.5kb downstream 0.5kb downstream 3563 true Chr5: 16230754-16234316 Arabidopsis thaliana
AT5G40520 0.5kb downstream 0.5kb downstream 500 false Chr5: 16230754-16231253 Arabidopsis thaliana
AT5G40520 1.0kb upstream 1.0kb upstream 4063 true Chr5: 16231254-16235316 Arabidopsis thaliana
AT5G40520 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16234317-16235316 Arabidopsis thaliana
AT5G40520 1.0kb downstream 1.0kb downstream 4063 true Chr5: 16230254-16234316 Arabidopsis thaliana
AT5G40520 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16230254-16231253 Arabidopsis thaliana
AT5G40520 2.0kb upstream 2.0kb upstream 5063 true Chr5: 16231254-16236316 Arabidopsis thaliana
AT5G40520 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16234317-16236316 Arabidopsis thaliana
AT5G40520 2.0kb downstream 2.0kb downstream 5063 true Chr5: 16229254-16234316 Arabidopsis thaliana
AT5G40520 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16229254-16231253 Arabidopsis thaliana
AT5G40520 5.0kb upstream 5.0kb upstream 8063 true Chr5: 16231254-16239316 Arabidopsis thaliana
AT5G40520 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16234317-16239316 Arabidopsis thaliana
AT5G40520 5.0kb downstream 5.0kb downstream 8063 true Chr5: 16226254-16234316 Arabidopsis thaliana
AT5G40520 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16226254-16231253 Arabidopsis thaliana
AT5G40520 10.0kb upstream 10.0kb upstream 13063 true Chr5: 16231254-16244316 Arabidopsis thaliana
AT5G40520 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16234317-16244316 Arabidopsis thaliana
AT5G40520 10.0kb downstream 10.0kb downstream 13063 true Chr5: 16221254-16234316 Arabidopsis thaliana
AT5G40520 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16221254-16231253 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364506 5261 Brassicaceae View MSA
123829249 5264 Brassicales-Malvales View MSA
124346588 5266 SBM View MSA
124242102 5268 Malvidae View MSA
124061999 5270 Rosid View MSA
123741146 5271 Pentapetalae View MSA
122770010 5272 Eudicot View MSA
122046829 5273 Angiosperm View MSA
121348564 5274 Embryophyte View MSA
123380915 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.223       High
cufflinks 1.839        
cufflinks 1.923        
cufflinks 1.944        
cufflinks 1.716       Low
cufflinks 1.798        

0 Strain