Gene : AT5G40040 A. thaliana TAIR10
Defline:  (1 of 5) K02943 - large subunit ribosomal protein LP2 (RP-LP2, RPLP2) Genomic Order:  3312
Name:  ? AT5G40040 Secondary Identifier:  ? PAC:19670124
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G40040 0.5kb upstream 0.5kb upstream 1062 true Chr5: 16029752-16030813 Arabidopsis thaliana
AT5G40040 0.5kb upstream 0.5kb upstream 500 false Chr5: 16030314-16030813 Arabidopsis thaliana
AT5G40040 0.5kb downstream 0.5kb downstream 1062 true Chr5: 16029252-16030313 Arabidopsis thaliana
AT5G40040 0.5kb downstream 0.5kb downstream 500 false Chr5: 16029252-16029751 Arabidopsis thaliana
AT5G40040 1.0kb upstream 1.0kb upstream 1562 true Chr5: 16029752-16031313 Arabidopsis thaliana
AT5G40040 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16030314-16031313 Arabidopsis thaliana
AT5G40040 1.0kb downstream 1.0kb downstream 1562 true Chr5: 16028752-16030313 Arabidopsis thaliana
AT5G40040 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16028752-16029751 Arabidopsis thaliana
AT5G40040 2.0kb upstream 2.0kb upstream 2562 true Chr5: 16029752-16032313 Arabidopsis thaliana
AT5G40040 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16030314-16032313 Arabidopsis thaliana
AT5G40040 2.0kb downstream 2.0kb downstream 2562 true Chr5: 16027752-16030313 Arabidopsis thaliana
AT5G40040 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16027752-16029751 Arabidopsis thaliana
AT5G40040 5.0kb upstream 5.0kb upstream 5562 true Chr5: 16029752-16035313 Arabidopsis thaliana
AT5G40040 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16030314-16035313 Arabidopsis thaliana
AT5G40040 5.0kb downstream 5.0kb downstream 5562 true Chr5: 16024752-16030313 Arabidopsis thaliana
AT5G40040 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16024752-16029751 Arabidopsis thaliana
AT5G40040 10.0kb upstream 10.0kb upstream 10562 true Chr5: 16029752-16040313 Arabidopsis thaliana
AT5G40040 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16030314-16040313 Arabidopsis thaliana
AT5G40040 10.0kb downstream 10.0kb downstream 10562 true Chr5: 16019752-16030313 Arabidopsis thaliana
AT5G40040 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16019752-16029751 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041516 5273 Angiosperm View MSA
122377646 5261 Brassicaceae View MSA
123842183 5264 Brassicales-Malvales View MSA
124349762 5266 SBM View MSA
124251288 5268 Malvidae View MSA
124073066 5270 Rosid View MSA
123742141 5271 Pentapetalae View MSA
122795888 5272 Eudicot View MSA
123429183 5275 Viridiplantae View MSA
121351420 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.13     Low  
cufflinks 0.027     Low Low
cufflinks 0.165     Low High
cufflinks 0.11     Low  
cufflinks 0.085     Low  
cufflinks 0.03     Low Low

0 Strain