Gene : AT5G40200 A. thaliana TAIR10
Defline:  (1 of 1) PTHR22939:SF67 - PROTEASE DO-LIKE 9 Genomic Order:  3327
Name:  ? AT5G40200 Secondary Identifier:  ? PAC:19666632
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G40200 0.5kb upstream 0.5kb upstream 3485 true Chr5: 16069830-16073314 Arabidopsis thaliana
AT5G40200 0.5kb upstream 0.5kb upstream 500 false Chr5: 16069830-16070329 Arabidopsis thaliana
AT5G40200 0.5kb downstream 0.5kb downstream 3485 true Chr5: 16070330-16073814 Arabidopsis thaliana
AT5G40200 0.5kb downstream 0.5kb downstream 500 false Chr5: 16073315-16073814 Arabidopsis thaliana
AT5G40200 1.0kb upstream 1.0kb upstream 3985 true Chr5: 16069330-16073314 Arabidopsis thaliana
AT5G40200 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16069330-16070329 Arabidopsis thaliana
AT5G40200 1.0kb downstream 1.0kb downstream 3985 true Chr5: 16070330-16074314 Arabidopsis thaliana
AT5G40200 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16073315-16074314 Arabidopsis thaliana
AT5G40200 2.0kb upstream 2.0kb upstream 4985 true Chr5: 16068330-16073314 Arabidopsis thaliana
AT5G40200 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16068330-16070329 Arabidopsis thaliana
AT5G40200 2.0kb downstream 2.0kb downstream 4985 true Chr5: 16070330-16075314 Arabidopsis thaliana
AT5G40200 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16073315-16075314 Arabidopsis thaliana
AT5G40200 5.0kb upstream 5.0kb upstream 7985 true Chr5: 16065330-16073314 Arabidopsis thaliana
AT5G40200 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16065330-16070329 Arabidopsis thaliana
AT5G40200 5.0kb downstream 5.0kb downstream 7985 true Chr5: 16070330-16078314 Arabidopsis thaliana
AT5G40200 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16073315-16078314 Arabidopsis thaliana
AT5G40200 10.0kb upstream 10.0kb upstream 12985 true Chr5: 16060330-16073314 Arabidopsis thaliana
AT5G40200 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16060330-16070329 Arabidopsis thaliana
AT5G40200 10.0kb downstream 10.0kb downstream 12985 true Chr5: 16070330-16083314 Arabidopsis thaliana
AT5G40200 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16073315-16083314 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363287 5261 Brassicaceae View MSA
123830875 5264 Brassicales-Malvales View MSA
124342689 5266 SBM View MSA
124251646 5268 Malvidae View MSA
124072965 5270 Rosid View MSA
123741119 5271 Pentapetalae View MSA
122794115 5272 Eudicot View MSA
122046723 5273 Angiosperm View MSA
121346662 5274 Embryophyte View MSA
123426440 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.221        
cufflinks 19.64        
cufflinks 11.962       Low
cufflinks 21.333        
cufflinks 10.974       Low
cufflinks 21.927        

0 Strain