Gene : AT5G39960 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11649//PTHR11649:SF5 - MSS1/TRME-RELATED GTP-BINDING PROTEIN // GTP-BINDING PROTEIN Genomic Order:  3304
Name:  ? AT5G39960 Secondary Identifier:  ? PAC:19666808
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G39960 0.5kb upstream 0.5kb upstream 3538 true Chr5: 15993521-15997058 Arabidopsis thaliana
AT5G39960 0.5kb upstream 0.5kb upstream 500 false Chr5: 15993521-15994020 Arabidopsis thaliana
AT5G39960 0.5kb downstream 0.5kb downstream 3538 true Chr5: 15994021-15997558 Arabidopsis thaliana
AT5G39960 0.5kb downstream 0.5kb downstream 500 false Chr5: 15997059-15997558 Arabidopsis thaliana
AT5G39960 1.0kb upstream 1.0kb upstream 4038 true Chr5: 15993021-15997058 Arabidopsis thaliana
AT5G39960 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15993021-15994020 Arabidopsis thaliana
AT5G39960 1.0kb downstream 1.0kb downstream 4038 true Chr5: 15994021-15998058 Arabidopsis thaliana
AT5G39960 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15997059-15998058 Arabidopsis thaliana
AT5G39960 2.0kb upstream 2.0kb upstream 5038 true Chr5: 15992021-15997058 Arabidopsis thaliana
AT5G39960 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15992021-15994020 Arabidopsis thaliana
AT5G39960 2.0kb downstream 2.0kb downstream 5038 true Chr5: 15994021-15999058 Arabidopsis thaliana
AT5G39960 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15997059-15999058 Arabidopsis thaliana
AT5G39960 5.0kb upstream 5.0kb upstream 8038 true Chr5: 15989021-15997058 Arabidopsis thaliana
AT5G39960 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15989021-15994020 Arabidopsis thaliana
AT5G39960 5.0kb downstream 5.0kb downstream 8038 true Chr5: 15994021-16002058 Arabidopsis thaliana
AT5G39960 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15997059-16002058 Arabidopsis thaliana
AT5G39960 10.0kb upstream 10.0kb upstream 13038 true Chr5: 15984021-15997058 Arabidopsis thaliana
AT5G39960 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15984021-15994020 Arabidopsis thaliana
AT5G39960 10.0kb downstream 10.0kb downstream 13038 true Chr5: 15994021-16007058 Arabidopsis thaliana
AT5G39960 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15997059-16007058 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365741 5261 Brassicaceae View MSA
123829944 5264 Brassicales-Malvales View MSA
124350628 5266 SBM View MSA
124243586 5268 Malvidae View MSA
124068964 5270 Rosid View MSA
123747725 5271 Pentapetalae View MSA
122788660 5272 Eudicot View MSA
122045813 5273 Angiosperm View MSA
121347341 5274 Embryophyte View MSA
123428429 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.632        
cufflinks 5.535        
cufflinks 4.379        
cufflinks 5.757        
cufflinks 3.86       Low
cufflinks 5.808        

0 Strain