Gene : AATP1 A. thaliana TAIR10
Primary Identifier:  ? AT5G40010 Defline:  (1 of 6) PTHR23070//PTHR23070:SF5 - BCS1 AAA-TYPE ATPASE // AAA-TYPE ATPASE FAMILY PROTEIN-RELATED
Genomic Order:  3309 Name:  ? AT5G40010
Secondary Identifier:  ? PAC:19667658
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G40010 0.5kb upstream 0.5kb upstream 2045 true Chr5: 16020218-16022262 Arabidopsis thaliana
AT5G40010 0.5kb upstream 0.5kb upstream 500 false Chr5: 16021763-16022262 Arabidopsis thaliana
AT5G40010 0.5kb downstream 0.5kb downstream 2045 true Chr5: 16019718-16021762 Arabidopsis thaliana
AT5G40010 0.5kb downstream 0.5kb downstream 500 false Chr5: 16019718-16020217 Arabidopsis thaliana
AT5G40010 1.0kb upstream 1.0kb upstream 2545 true Chr5: 16020218-16022762 Arabidopsis thaliana
AT5G40010 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16021763-16022762 Arabidopsis thaliana
AT5G40010 1.0kb downstream 1.0kb downstream 2545 true Chr5: 16019218-16021762 Arabidopsis thaliana
AT5G40010 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16019218-16020217 Arabidopsis thaliana
AT5G40010 2.0kb upstream 2.0kb upstream 3545 true Chr5: 16020218-16023762 Arabidopsis thaliana
AT5G40010 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16021763-16023762 Arabidopsis thaliana
AT5G40010 2.0kb downstream 2.0kb downstream 3545 true Chr5: 16018218-16021762 Arabidopsis thaliana
AT5G40010 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16018218-16020217 Arabidopsis thaliana
AT5G40010 5.0kb upstream 5.0kb upstream 6545 true Chr5: 16020218-16026762 Arabidopsis thaliana
AT5G40010 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16021763-16026762 Arabidopsis thaliana
AT5G40010 5.0kb downstream 5.0kb downstream 6545 true Chr5: 16015218-16021762 Arabidopsis thaliana
AT5G40010 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16015218-16020217 Arabidopsis thaliana
AT5G40010 10.0kb upstream 10.0kb upstream 11545 true Chr5: 16020218-16031762 Arabidopsis thaliana
AT5G40010 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16021763-16031762 Arabidopsis thaliana
AT5G40010 10.0kb downstream 10.0kb downstream 11545 true Chr5: 16010218-16021762 Arabidopsis thaliana
AT5G40010 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16010218-16020217 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122794526 5272 Eudicot View MSA
122374032 5261 Brassicaceae View MSA
123838716 5264 Brassicales-Malvales View MSA
124341066 5266 SBM View MSA
124247852 5268 Malvidae View MSA
124072543 5270 Rosid View MSA
123751074 5271 Pentapetalae View MSA
122051618 5273 Angiosperm View MSA
121350294 5274 Embryophyte View MSA
123428466 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.792        
cufflinks 2.179        
cufflinks 0.283       Low
cufflinks 9.887       High
cufflinks 0.336       Low
cufflinks 3.24        

0 Strain