Gene : AT5G39970 A. thaliana TAIR10
Defline:  (1 of 1) PTHR19328//PTHR19328:SF34 - PQQ OXIDOREDUCTASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  3305
Name:  ? AT5G39970 Secondary Identifier:  ? PAC:19670167
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana GLUCOSE1PMETAB-PWY Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G39970 0.5kb upstream 0.5kb upstream 3289 true Chr5: 15997525-16000813 Arabidopsis thaliana
AT5G39970 0.5kb upstream 0.5kb upstream 500 false Chr5: 15997525-15998024 Arabidopsis thaliana
AT5G39970 0.5kb downstream 0.5kb downstream 3289 true Chr5: 15998025-16001313 Arabidopsis thaliana
AT5G39970 0.5kb downstream 0.5kb downstream 500 false Chr5: 16000814-16001313 Arabidopsis thaliana
AT5G39970 1.0kb upstream 1.0kb upstream 3789 true Chr5: 15997025-16000813 Arabidopsis thaliana
AT5G39970 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15997025-15998024 Arabidopsis thaliana
AT5G39970 1.0kb downstream 1.0kb downstream 3789 true Chr5: 15998025-16001813 Arabidopsis thaliana
AT5G39970 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16000814-16001813 Arabidopsis thaliana
AT5G39970 2.0kb upstream 2.0kb upstream 4789 true Chr5: 15996025-16000813 Arabidopsis thaliana
AT5G39970 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15996025-15998024 Arabidopsis thaliana
AT5G39970 2.0kb downstream 2.0kb downstream 4789 true Chr5: 15998025-16002813 Arabidopsis thaliana
AT5G39970 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16000814-16002813 Arabidopsis thaliana
AT5G39970 5.0kb upstream 5.0kb upstream 7789 true Chr5: 15993025-16000813 Arabidopsis thaliana
AT5G39970 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15993025-15998024 Arabidopsis thaliana
AT5G39970 5.0kb downstream 5.0kb downstream 7789 true Chr5: 15998025-16005813 Arabidopsis thaliana
AT5G39970 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16000814-16005813 Arabidopsis thaliana
AT5G39970 10.0kb upstream 10.0kb upstream 12789 true Chr5: 15988025-16000813 Arabidopsis thaliana
AT5G39970 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15988025-15998024 Arabidopsis thaliana
AT5G39970 10.0kb downstream 10.0kb downstream 12789 true Chr5: 15998025-16010813 Arabidopsis thaliana
AT5G39970 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16000814-16010813 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378077 5261 Brassicaceae View MSA
123836627 5264 Brassicales-Malvales View MSA
124347839 5266 SBM View MSA
124245672 5268 Malvidae View MSA
124061288 5270 Rosid View MSA
123749936 5271 Pentapetalae View MSA
122794140 5272 Eudicot View MSA
122045052 5273 Angiosperm View MSA
121344764 5274 Embryophyte View MSA
123380098 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.17     Low  
cufflinks 4.842        
cufflinks 0.121     Low  
cufflinks 4.647        
cufflinks 0.062     Low Low
cufflinks 4.838        

0 Strain