Gene : AT5G39785 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10759//PTHR10759:SF1 - 60S RIBOSOMAL PROTEIN L34 // SUBFAMILY NOT NAMED Genomic Order:  3285
Name:  ? AT5G39785 Secondary Identifier:  ? PAC:19672307
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G39785 0.5kb upstream 0.5kb upstream 3589 true Chr5: 15928688-15932276 Arabidopsis thaliana
AT5G39785 0.5kb upstream 0.5kb upstream 500 false Chr5: 15928688-15929187 Arabidopsis thaliana
AT5G39785 0.5kb downstream 0.5kb downstream 3589 true Chr5: 15929188-15932776 Arabidopsis thaliana
AT5G39785 0.5kb downstream 0.5kb downstream 500 false Chr5: 15932277-15932776 Arabidopsis thaliana
AT5G39785 1.0kb upstream 1.0kb upstream 4089 true Chr5: 15928188-15932276 Arabidopsis thaliana
AT5G39785 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15928188-15929187 Arabidopsis thaliana
AT5G39785 1.0kb downstream 1.0kb downstream 4089 true Chr5: 15929188-15933276 Arabidopsis thaliana
AT5G39785 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15932277-15933276 Arabidopsis thaliana
AT5G39785 2.0kb upstream 2.0kb upstream 5089 true Chr5: 15927188-15932276 Arabidopsis thaliana
AT5G39785 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15927188-15929187 Arabidopsis thaliana
AT5G39785 2.0kb downstream 2.0kb downstream 5089 true Chr5: 15929188-15934276 Arabidopsis thaliana
AT5G39785 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15932277-15934276 Arabidopsis thaliana
AT5G39785 5.0kb upstream 5.0kb upstream 8089 true Chr5: 15924188-15932276 Arabidopsis thaliana
AT5G39785 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15924188-15929187 Arabidopsis thaliana
AT5G39785 5.0kb downstream 5.0kb downstream 8089 true Chr5: 15929188-15937276 Arabidopsis thaliana
AT5G39785 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15932277-15937276 Arabidopsis thaliana
AT5G39785 10.0kb upstream 10.0kb upstream 13089 true Chr5: 15919188-15932276 Arabidopsis thaliana
AT5G39785 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15919188-15929187 Arabidopsis thaliana
AT5G39785 10.0kb downstream 10.0kb downstream 13089 true Chr5: 15929188-15942276 Arabidopsis thaliana
AT5G39785 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15932277-15942276 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380179 5261 Brassicaceae View MSA
123838375 5264 Brassicales-Malvales View MSA
124343966 5266 SBM View MSA
124250191 5268 Malvidae View MSA
124067666 5270 Rosid View MSA
123750813 5271 Pentapetalae View MSA
122794318 5272 Eudicot View MSA
122048294 5273 Angiosperm View MSA
121310920 5274 Embryophyte View MSA
123348292 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.792        
cufflinks 6.76       High
cufflinks 1.152        
cufflinks 4.187        
cufflinks 0.743       Low
cufflinks 4.435        

0 Strain