Gene : DEG8 A. thaliana TAIR10
Primary Identifier:  ? AT5G39830 Defline:  (1 of 1) PTHR22939//PTHR22939:SF99 - SERINE PROTEASE FAMILY S1C HTRA-RELATED // PROTEASE DO-LIKE 8, CHLOROPLASTIC
Genomic Order:  3290 Name:  ? AT5G39830
Secondary Identifier:  ? PAC:19665582
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G39830 0.5kb upstream 0.5kb upstream 3531 true Chr5: 15942297-15945827 Arabidopsis thaliana
AT5G39830 0.5kb upstream 0.5kb upstream 500 false Chr5: 15942297-15942796 Arabidopsis thaliana
AT5G39830 0.5kb downstream 0.5kb downstream 3531 true Chr5: 15942797-15946327 Arabidopsis thaliana
AT5G39830 0.5kb downstream 0.5kb downstream 500 false Chr5: 15945828-15946327 Arabidopsis thaliana
AT5G39830 1.0kb upstream 1.0kb upstream 4031 true Chr5: 15941797-15945827 Arabidopsis thaliana
AT5G39830 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15941797-15942796 Arabidopsis thaliana
AT5G39830 1.0kb downstream 1.0kb downstream 4031 true Chr5: 15942797-15946827 Arabidopsis thaliana
AT5G39830 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15945828-15946827 Arabidopsis thaliana
AT5G39830 2.0kb upstream 2.0kb upstream 5031 true Chr5: 15940797-15945827 Arabidopsis thaliana
AT5G39830 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15940797-15942796 Arabidopsis thaliana
AT5G39830 2.0kb downstream 2.0kb downstream 5031 true Chr5: 15942797-15947827 Arabidopsis thaliana
AT5G39830 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15945828-15947827 Arabidopsis thaliana
AT5G39830 5.0kb upstream 5.0kb upstream 8031 true Chr5: 15937797-15945827 Arabidopsis thaliana
AT5G39830 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15937797-15942796 Arabidopsis thaliana
AT5G39830 5.0kb downstream 5.0kb downstream 8031 true Chr5: 15942797-15950827 Arabidopsis thaliana
AT5G39830 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15945828-15950827 Arabidopsis thaliana
AT5G39830 10.0kb upstream 10.0kb upstream 13031 true Chr5: 15932797-15945827 Arabidopsis thaliana
AT5G39830 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15932797-15942796 Arabidopsis thaliana
AT5G39830 10.0kb downstream 10.0kb downstream 13031 true Chr5: 15942797-15955827 Arabidopsis thaliana
AT5G39830 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15945828-15955827 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361072 5261 Brassicaceae View MSA
123830269 5264 Brassicales-Malvales View MSA
124340612 5266 SBM View MSA
124243486 5268 Malvidae View MSA
124061004 5270 Rosid View MSA
123741141 5271 Pentapetalae View MSA
122788612 5272 Eudicot View MSA
122041549 5273 Angiosperm View MSA
121347580 5274 Embryophyte View MSA
123424276 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.284        
cufflinks 2.665        
cufflinks 13.764        
cufflinks 2.696        
cufflinks 12.269        
cufflinks 2.055       Low

0 Strain