Gene : RPL5B A. thaliana TAIR10
Primary Identifier:  ? AT5G39740 Defline:  (1 of 2) K02932 - large subunit ribosomal protein L5e (RP-L5e, RPL5)
Genomic Order:  3281 Name:  ? AT5G39740
Secondary Identifier:  ? PAC:19670433
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G39740 0.5kb upstream 0.5kb upstream 2669 true Chr5: 15902796-15905464 Arabidopsis thaliana
AT5G39740 0.5kb upstream 0.5kb upstream 500 false Chr5: 15902796-15903295 Arabidopsis thaliana
AT5G39740 0.5kb downstream 0.5kb downstream 2669 true Chr5: 15903296-15905964 Arabidopsis thaliana
AT5G39740 0.5kb downstream 0.5kb downstream 500 false Chr5: 15905465-15905964 Arabidopsis thaliana
AT5G39740 1.0kb upstream 1.0kb upstream 3169 true Chr5: 15902296-15905464 Arabidopsis thaliana
AT5G39740 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15902296-15903295 Arabidopsis thaliana
AT5G39740 1.0kb downstream 1.0kb downstream 3169 true Chr5: 15903296-15906464 Arabidopsis thaliana
AT5G39740 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15905465-15906464 Arabidopsis thaliana
AT5G39740 2.0kb upstream 2.0kb upstream 4169 true Chr5: 15901296-15905464 Arabidopsis thaliana
AT5G39740 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15901296-15903295 Arabidopsis thaliana
AT5G39740 2.0kb downstream 2.0kb downstream 4169 true Chr5: 15903296-15907464 Arabidopsis thaliana
AT5G39740 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15905465-15907464 Arabidopsis thaliana
AT5G39740 5.0kb upstream 5.0kb upstream 7169 true Chr5: 15898296-15905464 Arabidopsis thaliana
AT5G39740 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15898296-15903295 Arabidopsis thaliana
AT5G39740 5.0kb downstream 5.0kb downstream 7169 true Chr5: 15903296-15910464 Arabidopsis thaliana
AT5G39740 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15905465-15910464 Arabidopsis thaliana
AT5G39740 10.0kb upstream 10.0kb upstream 12169 true Chr5: 15893296-15905464 Arabidopsis thaliana
AT5G39740 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15893296-15903295 Arabidopsis thaliana
AT5G39740 10.0kb downstream 10.0kb downstream 12169 true Chr5: 15903296-15915464 Arabidopsis thaliana
AT5G39740 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15905465-15915464 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380335 5261 Brassicaceae View MSA
123831832 5264 Brassicales-Malvales View MSA
124349835 5266 SBM View MSA
124252633 5268 Malvidae View MSA
124061233 5270 Rosid View MSA
123751479 5271 Pentapetalae View MSA
122787634 5272 Eudicot View MSA
122045073 5273 Angiosperm View MSA
121347703 5274 Embryophyte View MSA
123424766 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 88.136     High  
cufflinks 98.931     High  
cufflinks 76.303     High  
cufflinks 110.631     High  
cufflinks 59.114     High Low
cufflinks 124.054     High High

0 Strain