Gene : EMB2745 A. thaliana TAIR10
Primary Identifier:  ? AT5G39710 Defline:  (1 of 423) PF13041 - PPR repeat family (PPR_2)
Genomic Order:  3278 Name:  ? AT5G39710
Secondary Identifier:  ? PAC:19671367
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G39710 0.5kb upstream 0.5kb upstream 2744 true Chr5: 15895229-15897972 Arabidopsis thaliana
AT5G39710 0.5kb upstream 0.5kb upstream 500 false Chr5: 15895229-15895728 Arabidopsis thaliana
AT5G39710 0.5kb downstream 0.5kb downstream 2744 true Chr5: 15895729-15898472 Arabidopsis thaliana
AT5G39710 0.5kb downstream 0.5kb downstream 500 false Chr5: 15897973-15898472 Arabidopsis thaliana
AT5G39710 1.0kb upstream 1.0kb upstream 3244 true Chr5: 15894729-15897972 Arabidopsis thaliana
AT5G39710 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15894729-15895728 Arabidopsis thaliana
AT5G39710 1.0kb downstream 1.0kb downstream 3244 true Chr5: 15895729-15898972 Arabidopsis thaliana
AT5G39710 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15897973-15898972 Arabidopsis thaliana
AT5G39710 2.0kb upstream 2.0kb upstream 4244 true Chr5: 15893729-15897972 Arabidopsis thaliana
AT5G39710 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15893729-15895728 Arabidopsis thaliana
AT5G39710 2.0kb downstream 2.0kb downstream 4244 true Chr5: 15895729-15899972 Arabidopsis thaliana
AT5G39710 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15897973-15899972 Arabidopsis thaliana
AT5G39710 5.0kb upstream 5.0kb upstream 7244 true Chr5: 15890729-15897972 Arabidopsis thaliana
AT5G39710 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15890729-15895728 Arabidopsis thaliana
AT5G39710 5.0kb downstream 5.0kb downstream 7244 true Chr5: 15895729-15902972 Arabidopsis thaliana
AT5G39710 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15897973-15902972 Arabidopsis thaliana
AT5G39710 10.0kb upstream 10.0kb upstream 12244 true Chr5: 15885729-15897972 Arabidopsis thaliana
AT5G39710 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15885729-15895728 Arabidopsis thaliana
AT5G39710 10.0kb downstream 10.0kb downstream 12244 true Chr5: 15895729-15907972 Arabidopsis thaliana
AT5G39710 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15897973-15907972 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371794 5261 Brassicaceae View MSA
123841705 5264 Brassicales-Malvales View MSA
124337529 5266 SBM View MSA
124244878 5268 Malvidae View MSA
124063635 5270 Rosid View MSA
123750862 5271 Pentapetalae View MSA
122792992 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.204       High
cufflinks 3.623        
cufflinks 4.128        
cufflinks 4.097        
cufflinks 3.317       Low
cufflinks 4.489        

0 Strain