Gene : AT5G39520 A. thaliana TAIR10
Defline:  (1 of 4) PF09366 - Protein of unknown function (DUF1997) (DUF1997) Genomic Order:  3257
Name:  ? AT5G39520 Secondary Identifier:  ? PAC:19671955
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G39520 0.5kb upstream 0.5kb upstream 2258 true Chr5: 15823735-15825992 Arabidopsis thaliana
AT5G39520 0.5kb upstream 0.5kb upstream 500 false Chr5: 15825493-15825992 Arabidopsis thaliana
AT5G39520 0.5kb downstream 0.5kb downstream 2258 true Chr5: 15823235-15825492 Arabidopsis thaliana
AT5G39520 0.5kb downstream 0.5kb downstream 500 false Chr5: 15823235-15823734 Arabidopsis thaliana
AT5G39520 1.0kb upstream 1.0kb upstream 2758 true Chr5: 15823735-15826492 Arabidopsis thaliana
AT5G39520 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15825493-15826492 Arabidopsis thaliana
AT5G39520 1.0kb downstream 1.0kb downstream 2758 true Chr5: 15822735-15825492 Arabidopsis thaliana
AT5G39520 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15822735-15823734 Arabidopsis thaliana
AT5G39520 2.0kb upstream 2.0kb upstream 3758 true Chr5: 15823735-15827492 Arabidopsis thaliana
AT5G39520 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15825493-15827492 Arabidopsis thaliana
AT5G39520 2.0kb downstream 2.0kb downstream 3758 true Chr5: 15821735-15825492 Arabidopsis thaliana
AT5G39520 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15821735-15823734 Arabidopsis thaliana
AT5G39520 5.0kb upstream 5.0kb upstream 6758 true Chr5: 15823735-15830492 Arabidopsis thaliana
AT5G39520 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15825493-15830492 Arabidopsis thaliana
AT5G39520 5.0kb downstream 5.0kb downstream 6758 true Chr5: 15818735-15825492 Arabidopsis thaliana
AT5G39520 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15818735-15823734 Arabidopsis thaliana
AT5G39520 10.0kb upstream 10.0kb upstream 11758 true Chr5: 15823735-15835492 Arabidopsis thaliana
AT5G39520 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15825493-15835492 Arabidopsis thaliana
AT5G39520 10.0kb downstream 10.0kb downstream 11758 true Chr5: 15813735-15825492 Arabidopsis thaliana
AT5G39520 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15813735-15823734 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362631 5261 Brassicaceae View MSA
123798397 5264 Brassicales-Malvales View MSA
124296037 5266 SBM View MSA
124148307 5268 Malvidae View MSA
123874328 5270 Rosid View MSA
123458319 5271 Pentapetalae View MSA
122493725 5272 Eudicot View MSA
122045194 5273 Angiosperm View MSA
121349482 5274 Embryophyte View MSA
123426065 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.89        
cufflinks 0.439       Low
cufflinks 11.693        
cufflinks 2.36        
cufflinks 21.37       High
cufflinks 0.297     Low Low

0 Strain