Gene : AT5G39590 A. thaliana TAIR10
Defline:  (1 of 1) PTHR23354//PTHR23354:SF67 - NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED // TLD-DOMAIN CONTAINING NUCLEOLAR PROTEIN Genomic Order:  3265
Name:  ? AT5G39590 Secondary Identifier:  ? PAC:19667710
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G39590 0.5kb upstream 0.5kb upstream 3099 true Chr5: 15850892-15853990 Arabidopsis thaliana
AT5G39590 0.5kb upstream 0.5kb upstream 500 false Chr5: 15850892-15851391 Arabidopsis thaliana
AT5G39590 0.5kb downstream 0.5kb downstream 3099 true Chr5: 15851392-15854490 Arabidopsis thaliana
AT5G39590 0.5kb downstream 0.5kb downstream 500 false Chr5: 15853991-15854490 Arabidopsis thaliana
AT5G39590 1.0kb upstream 1.0kb upstream 3599 true Chr5: 15850392-15853990 Arabidopsis thaliana
AT5G39590 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15850392-15851391 Arabidopsis thaliana
AT5G39590 1.0kb downstream 1.0kb downstream 3599 true Chr5: 15851392-15854990 Arabidopsis thaliana
AT5G39590 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15853991-15854990 Arabidopsis thaliana
AT5G39590 2.0kb upstream 2.0kb upstream 4599 true Chr5: 15849392-15853990 Arabidopsis thaliana
AT5G39590 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15849392-15851391 Arabidopsis thaliana
AT5G39590 2.0kb downstream 2.0kb downstream 4599 true Chr5: 15851392-15855990 Arabidopsis thaliana
AT5G39590 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15853991-15855990 Arabidopsis thaliana
AT5G39590 5.0kb upstream 5.0kb upstream 7599 true Chr5: 15846392-15853990 Arabidopsis thaliana
AT5G39590 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15846392-15851391 Arabidopsis thaliana
AT5G39590 5.0kb downstream 5.0kb downstream 7599 true Chr5: 15851392-15858990 Arabidopsis thaliana
AT5G39590 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15853991-15858990 Arabidopsis thaliana
AT5G39590 10.0kb upstream 10.0kb upstream 12599 true Chr5: 15841392-15853990 Arabidopsis thaliana
AT5G39590 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15841392-15851391 Arabidopsis thaliana
AT5G39590 10.0kb downstream 10.0kb downstream 12599 true Chr5: 15851392-15863990 Arabidopsis thaliana
AT5G39590 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15853991-15863990 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365221 5261 Brassicaceae View MSA
123827897 5264 Brassicales-Malvales View MSA
124338011 5266 SBM View MSA
124236976 5268 Malvidae View MSA
124061375 5270 Rosid View MSA
123739747 5271 Pentapetalae View MSA
122789164 5272 Eudicot View MSA
122042380 5273 Angiosperm View MSA
121345600 5274 Embryophyte View MSA
123380242 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 57.914     High High
cufflinks 18.973       Low
cufflinks 36.533     High  
cufflinks 21.029       Low
cufflinks 38.006     High  
cufflinks 37.611     High  

0 Strain