Gene : AT5G39380 A. thaliana TAIR10
Defline:  (1 of 4) PTHR33349:SF1 - CALMODULIN-BINDING PROTEIN-LIKE PROTEIN Genomic Order:  3241
Name:  ? AT5G39380 Secondary Identifier:  ? PAC:19668969
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G39380 0.5kb upstream 0.5kb upstream 2470 true Chr5: 15758717-15761186 Arabidopsis thaliana
AT5G39380 0.5kb upstream 0.5kb upstream 500 false Chr5: 15760687-15761186 Arabidopsis thaliana
AT5G39380 0.5kb downstream 0.5kb downstream 2470 true Chr5: 15758217-15760686 Arabidopsis thaliana
AT5G39380 0.5kb downstream 0.5kb downstream 500 false Chr5: 15758217-15758716 Arabidopsis thaliana
AT5G39380 1.0kb upstream 1.0kb upstream 2970 true Chr5: 15758717-15761686 Arabidopsis thaliana
AT5G39380 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15760687-15761686 Arabidopsis thaliana
AT5G39380 1.0kb downstream 1.0kb downstream 2970 true Chr5: 15757717-15760686 Arabidopsis thaliana
AT5G39380 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15757717-15758716 Arabidopsis thaliana
AT5G39380 2.0kb upstream 2.0kb upstream 3970 true Chr5: 15758717-15762686 Arabidopsis thaliana
AT5G39380 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15760687-15762686 Arabidopsis thaliana
AT5G39380 2.0kb downstream 2.0kb downstream 3970 true Chr5: 15756717-15760686 Arabidopsis thaliana
AT5G39380 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15756717-15758716 Arabidopsis thaliana
AT5G39380 5.0kb upstream 5.0kb upstream 6970 true Chr5: 15758717-15765686 Arabidopsis thaliana
AT5G39380 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15760687-15765686 Arabidopsis thaliana
AT5G39380 5.0kb downstream 5.0kb downstream 6970 true Chr5: 15753717-15760686 Arabidopsis thaliana
AT5G39380 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15753717-15758716 Arabidopsis thaliana
AT5G39380 10.0kb upstream 10.0kb upstream 11970 true Chr5: 15758717-15770686 Arabidopsis thaliana
AT5G39380 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15760687-15770686 Arabidopsis thaliana
AT5G39380 10.0kb downstream 10.0kb downstream 11970 true Chr5: 15748717-15760686 Arabidopsis thaliana
AT5G39380 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15748717-15758716 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363697 5261 Brassicaceae View MSA
123835163 5264 Brassicales-Malvales View MSA
124339592 5266 SBM View MSA
124251755 5268 Malvidae View MSA
124071368 5270 Rosid View MSA
123747266 5271 Pentapetalae View MSA
122791700 5272 Eudicot View MSA
122049336 5273 Angiosperm View MSA
121311351 5274 Embryophyte View MSA
123348657 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.668        
cufflinks 10.055        
cufflinks 1.604       Low
cufflinks 8.33        
cufflinks 1.654       Low
cufflinks 11.893       High

0 Strain