Gene : AT5G39090 A. thaliana TAIR10
Defline:  (1 of 11) PTHR31625//PTHR31625:SF5 - FAMILY NOT NAMED // ACYLTRANSFERASE-LIKE PROTEIN-RELATED Genomic Order:  3211
Name:  ? AT5G39090 Secondary Identifier:  ? PAC:19669014
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G39090 0.5kb upstream 0.5kb upstream 2014 true Chr5: 15643103-15645116 Arabidopsis thaliana
AT5G39090 0.5kb upstream 0.5kb upstream 500 false Chr5: 15643103-15643602 Arabidopsis thaliana
AT5G39090 0.5kb downstream 0.5kb downstream 2014 true Chr5: 15643603-15645616 Arabidopsis thaliana
AT5G39090 0.5kb downstream 0.5kb downstream 500 false Chr5: 15645117-15645616 Arabidopsis thaliana
AT5G39090 1.0kb upstream 1.0kb upstream 2514 true Chr5: 15642603-15645116 Arabidopsis thaliana
AT5G39090 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15642603-15643602 Arabidopsis thaliana
AT5G39090 1.0kb downstream 1.0kb downstream 2514 true Chr5: 15643603-15646116 Arabidopsis thaliana
AT5G39090 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15645117-15646116 Arabidopsis thaliana
AT5G39090 2.0kb upstream 2.0kb upstream 3514 true Chr5: 15641603-15645116 Arabidopsis thaliana
AT5G39090 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15641603-15643602 Arabidopsis thaliana
AT5G39090 2.0kb downstream 2.0kb downstream 3514 true Chr5: 15643603-15647116 Arabidopsis thaliana
AT5G39090 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15645117-15647116 Arabidopsis thaliana
AT5G39090 5.0kb upstream 5.0kb upstream 6514 true Chr5: 15638603-15645116 Arabidopsis thaliana
AT5G39090 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15638603-15643602 Arabidopsis thaliana
AT5G39090 5.0kb downstream 5.0kb downstream 6514 true Chr5: 15643603-15650116 Arabidopsis thaliana
AT5G39090 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15645117-15650116 Arabidopsis thaliana
AT5G39090 10.0kb upstream 10.0kb upstream 11514 true Chr5: 15633603-15645116 Arabidopsis thaliana
AT5G39090 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15633603-15643602 Arabidopsis thaliana
AT5G39090 10.0kb downstream 10.0kb downstream 11514 true Chr5: 15643603-15655116 Arabidopsis thaliana
AT5G39090 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15645117-15655116 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122332111 5261 Brassicaceae View MSA
123773219 5264 Brassicales-Malvales View MSA
124351480 5266 SBM View MSA
124250860 5268 Malvidae View MSA
124073771 5270 Rosid View MSA
123753544 5271 Pentapetalae View MSA
122797119 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.654        
cufflinks 0.992        
cufflinks 1.097        
cufflinks 1.695        
cufflinks 1.875       High
cufflinks 0.933       Low

0 Strain