Gene : AT5G39110 A. thaliana TAIR10
Defline:  (1 of 14) PTHR31238//PTHR31238:SF44 - FAMILY NOT NAMED // GERMIN-LIKE PROTEIN SUBFAMILY 1 MEMBER 13-RELATED Genomic Order:  3213
Name:  ? AT5G39110 Secondary Identifier:  ? PAC:19671449
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G39110 0.5kb upstream 0.5kb upstream 1283 true Chr5: 15657802-15659084 Arabidopsis thaliana
AT5G39110 0.5kb upstream 0.5kb upstream 500 false Chr5: 15658585-15659084 Arabidopsis thaliana
AT5G39110 0.5kb downstream 0.5kb downstream 1283 true Chr5: 15657302-15658584 Arabidopsis thaliana
AT5G39110 0.5kb downstream 0.5kb downstream 500 false Chr5: 15657302-15657801 Arabidopsis thaliana
AT5G39110 1.0kb upstream 1.0kb upstream 1783 true Chr5: 15657802-15659584 Arabidopsis thaliana
AT5G39110 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15658585-15659584 Arabidopsis thaliana
AT5G39110 1.0kb downstream 1.0kb downstream 1783 true Chr5: 15656802-15658584 Arabidopsis thaliana
AT5G39110 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15656802-15657801 Arabidopsis thaliana
AT5G39110 2.0kb upstream 2.0kb upstream 2783 true Chr5: 15657802-15660584 Arabidopsis thaliana
AT5G39110 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15658585-15660584 Arabidopsis thaliana
AT5G39110 2.0kb downstream 2.0kb downstream 2783 true Chr5: 15655802-15658584 Arabidopsis thaliana
AT5G39110 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15655802-15657801 Arabidopsis thaliana
AT5G39110 5.0kb upstream 5.0kb upstream 5783 true Chr5: 15657802-15663584 Arabidopsis thaliana
AT5G39110 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15658585-15663584 Arabidopsis thaliana
AT5G39110 5.0kb downstream 5.0kb downstream 5783 true Chr5: 15652802-15658584 Arabidopsis thaliana
AT5G39110 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15652802-15657801 Arabidopsis thaliana
AT5G39110 10.0kb upstream 10.0kb upstream 10783 true Chr5: 15657802-15668584 Arabidopsis thaliana
AT5G39110 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15658585-15668584 Arabidopsis thaliana
AT5G39110 10.0kb downstream 10.0kb downstream 10783 true Chr5: 15647802-15658584 Arabidopsis thaliana
AT5G39110 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15647802-15657801 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377833 5261 Brassicaceae View MSA
123838238 5264 Brassicales-Malvales View MSA
124350014 5266 SBM View MSA
124252881 5268 Malvidae View MSA
124073814 5270 Rosid View MSA
123752925 5271 Pentapetalae View MSA
122797163 5272 Eudicot View MSA
122049786 5273 Angiosperm View MSA
121349986 5274 Embryophyte View MSA
123427618 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.72       Low
cufflinks 29.548     High  
cufflinks 1.221       Low
cufflinks 50.054     High High
cufflinks 5.938        
cufflinks 20.184        

0 Strain