Gene : AT5G39220 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10992//PTHR10992:SF825 - ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEIN // HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN Genomic Order:  3224
Name:  ? AT5G39220 Secondary Identifier:  ? PAC:19667370
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G39220 0.5kb upstream 0.5kb upstream 2913 true Chr5: 15705316-15708228 Arabidopsis thaliana
AT5G39220 0.5kb upstream 0.5kb upstream 500 false Chr5: 15705316-15705815 Arabidopsis thaliana
AT5G39220 0.5kb downstream 0.5kb downstream 2913 true Chr5: 15705816-15708728 Arabidopsis thaliana
AT5G39220 0.5kb downstream 0.5kb downstream 500 false Chr5: 15708229-15708728 Arabidopsis thaliana
AT5G39220 1.0kb upstream 1.0kb upstream 3413 true Chr5: 15704816-15708228 Arabidopsis thaliana
AT5G39220 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15704816-15705815 Arabidopsis thaliana
AT5G39220 1.0kb downstream 1.0kb downstream 3413 true Chr5: 15705816-15709228 Arabidopsis thaliana
AT5G39220 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15708229-15709228 Arabidopsis thaliana
AT5G39220 2.0kb upstream 2.0kb upstream 4413 true Chr5: 15703816-15708228 Arabidopsis thaliana
AT5G39220 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15703816-15705815 Arabidopsis thaliana
AT5G39220 2.0kb downstream 2.0kb downstream 4413 true Chr5: 15705816-15710228 Arabidopsis thaliana
AT5G39220 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15708229-15710228 Arabidopsis thaliana
AT5G39220 5.0kb upstream 5.0kb upstream 7413 true Chr5: 15700816-15708228 Arabidopsis thaliana
AT5G39220 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15700816-15705815 Arabidopsis thaliana
AT5G39220 5.0kb downstream 5.0kb downstream 7413 true Chr5: 15705816-15713228 Arabidopsis thaliana
AT5G39220 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15708229-15713228 Arabidopsis thaliana
AT5G39220 10.0kb upstream 10.0kb upstream 12413 true Chr5: 15695816-15708228 Arabidopsis thaliana
AT5G39220 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15695816-15705815 Arabidopsis thaliana
AT5G39220 10.0kb downstream 10.0kb downstream 12413 true Chr5: 15705816-15718228 Arabidopsis thaliana
AT5G39220 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15708229-15718228 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377922 5261 Brassicaceae View MSA
123838601 5264 Brassicales-Malvales View MSA
124344476 5266 SBM View MSA
124240595 5268 Malvidae View MSA
124072727 5270 Rosid View MSA
123746455 5271 Pentapetalae View MSA
122796232 5272 Eudicot View MSA
122043418 5273 Angiosperm View MSA
123428977 5275 Viridiplantae View MSA
121348210 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.75       High
cufflinks 0.389        
cufflinks 0.387        
cufflinks 0.329     Low  
cufflinks 0.377        
cufflinks 0.433        

0 Strain