Gene : RAD23D A. thaliana TAIR10
Primary Identifier:  ? AT5G38470 Defline:  (1 of 2) PTHR10621//PTHR10621:SF12 - UV EXCISION REPAIR PROTEIN RAD23 // SUBFAMILY NOT NAMED
Genomic Order:  3149 Name:  ? AT5G38470
Secondary Identifier:  ? PAC:19669090
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G38470 0.5kb upstream 0.5kb upstream 3570 true Chr5: 15404142-15407711 Arabidopsis thaliana
AT5G38470 0.5kb upstream 0.5kb upstream 500 false Chr5: 15404142-15404641 Arabidopsis thaliana
AT5G38470 0.5kb downstream 0.5kb downstream 3570 true Chr5: 15404642-15408211 Arabidopsis thaliana
AT5G38470 0.5kb downstream 0.5kb downstream 500 false Chr5: 15407712-15408211 Arabidopsis thaliana
AT5G38470 1.0kb upstream 1.0kb upstream 4070 true Chr5: 15403642-15407711 Arabidopsis thaliana
AT5G38470 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15403642-15404641 Arabidopsis thaliana
AT5G38470 1.0kb downstream 1.0kb downstream 4070 true Chr5: 15404642-15408711 Arabidopsis thaliana
AT5G38470 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15407712-15408711 Arabidopsis thaliana
AT5G38470 2.0kb upstream 2.0kb upstream 5070 true Chr5: 15402642-15407711 Arabidopsis thaliana
AT5G38470 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15402642-15404641 Arabidopsis thaliana
AT5G38470 2.0kb downstream 2.0kb downstream 5070 true Chr5: 15404642-15409711 Arabidopsis thaliana
AT5G38470 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15407712-15409711 Arabidopsis thaliana
AT5G38470 5.0kb upstream 5.0kb upstream 8070 true Chr5: 15399642-15407711 Arabidopsis thaliana
AT5G38470 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15399642-15404641 Arabidopsis thaliana
AT5G38470 5.0kb downstream 5.0kb downstream 8070 true Chr5: 15404642-15412711 Arabidopsis thaliana
AT5G38470 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15407712-15412711 Arabidopsis thaliana
AT5G38470 10.0kb upstream 10.0kb upstream 13070 true Chr5: 15394642-15407711 Arabidopsis thaliana
AT5G38470 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15394642-15404641 Arabidopsis thaliana
AT5G38470 10.0kb downstream 10.0kb downstream 13070 true Chr5: 15404642-15417711 Arabidopsis thaliana
AT5G38470 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15407712-15417711 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040911 5273 Angiosperm View MSA
122370081 5261 Brassicaceae View MSA
123837452 5264 Brassicales-Malvales View MSA
124347950 5266 SBM View MSA
124244016 5268 Malvidae View MSA
124061978 5270 Rosid View MSA
123736504 5271 Pentapetalae View MSA
122787573 5272 Eudicot View MSA
121350140 5274 Embryophyte View MSA
123423951 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.418        
cufflinks 19.354        
cufflinks 13.174       Low
cufflinks 20.089        
cufflinks 14.937        
cufflinks 20.902       High

0 Strain