Gene : AT5G38560 A. thaliana TAIR10
Defline:  (1 of 1) PTHR27001//PTHR27001:SF132 - FAMILY NOT NAMED // PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 Genomic Order:  3158
Name:  ? AT5G38560 Secondary Identifier:  ? PAC:19670557
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G38560 0.5kb upstream 0.5kb upstream 4416 true Chr5: 15438749-15443164 Arabidopsis thaliana
AT5G38560 0.5kb upstream 0.5kb upstream 500 false Chr5: 15438749-15439248 Arabidopsis thaliana
AT5G38560 0.5kb downstream 0.5kb downstream 4416 true Chr5: 15439249-15443664 Arabidopsis thaliana
AT5G38560 0.5kb downstream 0.5kb downstream 500 false Chr5: 15443165-15443664 Arabidopsis thaliana
AT5G38560 1.0kb upstream 1.0kb upstream 4916 true Chr5: 15438249-15443164 Arabidopsis thaliana
AT5G38560 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15438249-15439248 Arabidopsis thaliana
AT5G38560 1.0kb downstream 1.0kb downstream 4916 true Chr5: 15439249-15444164 Arabidopsis thaliana
AT5G38560 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15443165-15444164 Arabidopsis thaliana
AT5G38560 2.0kb upstream 2.0kb upstream 5916 true Chr5: 15437249-15443164 Arabidopsis thaliana
AT5G38560 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15437249-15439248 Arabidopsis thaliana
AT5G38560 2.0kb downstream 2.0kb downstream 5916 true Chr5: 15439249-15445164 Arabidopsis thaliana
AT5G38560 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15443165-15445164 Arabidopsis thaliana
AT5G38560 5.0kb upstream 5.0kb upstream 8916 true Chr5: 15434249-15443164 Arabidopsis thaliana
AT5G38560 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15434249-15439248 Arabidopsis thaliana
AT5G38560 5.0kb downstream 5.0kb downstream 8916 true Chr5: 15439249-15448164 Arabidopsis thaliana
AT5G38560 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15443165-15448164 Arabidopsis thaliana
AT5G38560 10.0kb upstream 10.0kb upstream 13916 true Chr5: 15429249-15443164 Arabidopsis thaliana
AT5G38560 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15429249-15439248 Arabidopsis thaliana
AT5G38560 10.0kb downstream 10.0kb downstream 13916 true Chr5: 15439249-15453164 Arabidopsis thaliana
AT5G38560 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15443165-15453164 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373113 5261 Brassicaceae View MSA
123830846 5264 Brassicales-Malvales View MSA
124342315 5266 SBM View MSA
124243010 5268 Malvidae View MSA
124063258 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.399        
cufflinks 14.074        
cufflinks 9.601       Low
cufflinks 14.594        
cufflinks 10.167        
cufflinks 16.22       High

0 Strain