Gene : AT5G38410 A. thaliana TAIR10
Defline:  (1 of 4) K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) Genomic Order:  3142
Name:  ? AT5G38410 Secondary Identifier:  ? PAC:19672957
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana CALVIN-PWY Arabidopsis thaliana pathologic  
Athaliana PHOTOALL-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-5723 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G38410 0.5kb upstream 0.5kb upstream 1744 true Chr5: 15377173-15378916 Arabidopsis thaliana
AT5G38410 0.5kb upstream 0.5kb upstream 500 false Chr5: 15378417-15378916 Arabidopsis thaliana
AT5G38410 0.5kb downstream 0.5kb downstream 1744 true Chr5: 15376673-15378416 Arabidopsis thaliana
AT5G38410 0.5kb downstream 0.5kb downstream 500 false Chr5: 15376673-15377172 Arabidopsis thaliana
AT5G38410 1.0kb upstream 1.0kb upstream 2244 true Chr5: 15377173-15379416 Arabidopsis thaliana
AT5G38410 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15378417-15379416 Arabidopsis thaliana
AT5G38410 1.0kb downstream 1.0kb downstream 2244 true Chr5: 15376173-15378416 Arabidopsis thaliana
AT5G38410 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15376173-15377172 Arabidopsis thaliana
AT5G38410 2.0kb upstream 2.0kb upstream 3244 true Chr5: 15377173-15380416 Arabidopsis thaliana
AT5G38410 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15378417-15380416 Arabidopsis thaliana
AT5G38410 2.0kb downstream 2.0kb downstream 3244 true Chr5: 15375173-15378416 Arabidopsis thaliana
AT5G38410 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15375173-15377172 Arabidopsis thaliana
AT5G38410 5.0kb upstream 5.0kb upstream 6244 true Chr5: 15377173-15383416 Arabidopsis thaliana
AT5G38410 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15378417-15383416 Arabidopsis thaliana
AT5G38410 5.0kb downstream 5.0kb downstream 6244 true Chr5: 15372173-15378416 Arabidopsis thaliana
AT5G38410 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15372173-15377172 Arabidopsis thaliana
AT5G38410 10.0kb upstream 10.0kb upstream 11244 true Chr5: 15377173-15388416 Arabidopsis thaliana
AT5G38410 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15378417-15388416 Arabidopsis thaliana
AT5G38410 10.0kb downstream 10.0kb downstream 11244 true Chr5: 15367173-15378416 Arabidopsis thaliana
AT5G38410 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15367173-15377172 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122331488 5261 Brassicaceae Singleton cluster - no MSA
123836682 5264 Brassicales-Malvales View MSA
124340616 5266 SBM View MSA
124250367 5268 Malvidae View MSA
124066802 5270 Rosid View MSA
123747186 5271 Pentapetalae View MSA
122796864 5272 Eudicot View MSA
122046951 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 774.094     High  
cufflinks 0.215     Low  
cufflinks 787.426     High  
cufflinks 0.419        
cufflinks 693.7     High  
cufflinks 0.284     Low  

0 Strain