Gene : AT5G38420 A. thaliana TAIR10
Defline:  (1 of 4) K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) Genomic Order:  3143
Name:  ? AT5G38420 Secondary Identifier:  ? PAC:19665804
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana CALVIN-PWY Arabidopsis thaliana pathologic  
Athaliana PHOTOALL-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-5723 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G38420 0.5kb upstream 0.5kb upstream 1591 true Chr5: 15380945-15382535 Arabidopsis thaliana
AT5G38420 0.5kb upstream 0.5kb upstream 500 false Chr5: 15382036-15382535 Arabidopsis thaliana
AT5G38420 0.5kb downstream 0.5kb downstream 1591 true Chr5: 15380445-15382035 Arabidopsis thaliana
AT5G38420 0.5kb downstream 0.5kb downstream 500 false Chr5: 15380445-15380944 Arabidopsis thaliana
AT5G38420 1.0kb upstream 1.0kb upstream 2091 true Chr5: 15380945-15383035 Arabidopsis thaliana
AT5G38420 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15382036-15383035 Arabidopsis thaliana
AT5G38420 1.0kb downstream 1.0kb downstream 2091 true Chr5: 15379945-15382035 Arabidopsis thaliana
AT5G38420 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15379945-15380944 Arabidopsis thaliana
AT5G38420 2.0kb upstream 2.0kb upstream 3091 true Chr5: 15380945-15384035 Arabidopsis thaliana
AT5G38420 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15382036-15384035 Arabidopsis thaliana
AT5G38420 2.0kb downstream 2.0kb downstream 3091 true Chr5: 15378945-15382035 Arabidopsis thaliana
AT5G38420 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15378945-15380944 Arabidopsis thaliana
AT5G38420 5.0kb upstream 5.0kb upstream 6091 true Chr5: 15380945-15387035 Arabidopsis thaliana
AT5G38420 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15382036-15387035 Arabidopsis thaliana
AT5G38420 5.0kb downstream 5.0kb downstream 6091 true Chr5: 15375945-15382035 Arabidopsis thaliana
AT5G38420 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15375945-15380944 Arabidopsis thaliana
AT5G38420 10.0kb upstream 10.0kb upstream 11091 true Chr5: 15380945-15392035 Arabidopsis thaliana
AT5G38420 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15382036-15392035 Arabidopsis thaliana
AT5G38420 10.0kb downstream 10.0kb downstream 11091 true Chr5: 15370945-15382035 Arabidopsis thaliana
AT5G38420 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15370945-15380944 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380509 5261 Brassicaceae View MSA
123836682 5264 Brassicales-Malvales View MSA
124340616 5266 SBM View MSA
124250367 5268 Malvidae View MSA
124066802 5270 Rosid View MSA
123747186 5271 Pentapetalae View MSA
122796864 5272 Eudicot View MSA
122046951 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1973.703     High  
cufflinks 0.166     Low  
cufflinks 1207.467     High  
cufflinks 0.206     Low  
cufflinks 979.93     High  
cufflinks 0.361        

0 Strain