Gene : AT5G38430 A. thaliana TAIR10
Defline:  (1 of 4) K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) Genomic Order:  3144
Name:  ? AT5G38430 Secondary Identifier:  ? PAC:19669595
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana CALVIN-PWY Arabidopsis thaliana pathologic  
Athaliana PHOTOALL-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-5723 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G38430 0.5kb upstream 0.5kb upstream 1631 true Chr5: 15384117-15385747 Arabidopsis thaliana
AT5G38430 0.5kb upstream 0.5kb upstream 500 false Chr5: 15385248-15385747 Arabidopsis thaliana
AT5G38430 0.5kb downstream 0.5kb downstream 1631 true Chr5: 15383617-15385247 Arabidopsis thaliana
AT5G38430 0.5kb downstream 0.5kb downstream 500 false Chr5: 15383617-15384116 Arabidopsis thaliana
AT5G38430 1.0kb upstream 1.0kb upstream 2131 true Chr5: 15384117-15386247 Arabidopsis thaliana
AT5G38430 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15385248-15386247 Arabidopsis thaliana
AT5G38430 1.0kb downstream 1.0kb downstream 2131 true Chr5: 15383117-15385247 Arabidopsis thaliana
AT5G38430 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15383117-15384116 Arabidopsis thaliana
AT5G38430 2.0kb upstream 2.0kb upstream 3131 true Chr5: 15384117-15387247 Arabidopsis thaliana
AT5G38430 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15385248-15387247 Arabidopsis thaliana
AT5G38430 2.0kb downstream 2.0kb downstream 3131 true Chr5: 15382117-15385247 Arabidopsis thaliana
AT5G38430 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15382117-15384116 Arabidopsis thaliana
AT5G38430 5.0kb upstream 5.0kb upstream 6131 true Chr5: 15384117-15390247 Arabidopsis thaliana
AT5G38430 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15385248-15390247 Arabidopsis thaliana
AT5G38430 5.0kb downstream 5.0kb downstream 6131 true Chr5: 15379117-15385247 Arabidopsis thaliana
AT5G38430 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15379117-15384116 Arabidopsis thaliana
AT5G38430 10.0kb upstream 10.0kb upstream 11131 true Chr5: 15384117-15395247 Arabidopsis thaliana
AT5G38430 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15385248-15395247 Arabidopsis thaliana
AT5G38430 10.0kb downstream 10.0kb downstream 11131 true Chr5: 15374117-15385247 Arabidopsis thaliana
AT5G38430 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15374117-15384116 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380509 5261 Brassicaceae View MSA
123836682 5264 Brassicales-Malvales View MSA
124340616 5266 SBM View MSA
124250367 5268 Malvidae View MSA
124066802 5270 Rosid View MSA
123747186 5271 Pentapetalae View MSA
122796864 5272 Eudicot View MSA
122046951 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1269.655     High  
cufflinks 0.135     Low Low
cufflinks 1139.121     High  
cufflinks 0.351     Low  
cufflinks 502.798     High  
cufflinks 0.185     Low  

0 Strain