Gene : ARC6 A. thaliana TAIR10
Primary Identifier:  ? AT5G42480 Defline:  (1 of 1) PTHR33925//PTHR33925:SF3 - FAMILY NOT NAMED // PROTEIN ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, CHLOROPLASTIC
Genomic Order:  3577 Name:  ? AT5G42480
Secondary Identifier:  ? PAC:19668024
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G42480 0.5kb upstream 0.5kb upstream 3759 true Chr5: 16984682-16988440 Arabidopsis thaliana
AT5G42480 0.5kb upstream 0.5kb upstream 500 false Chr5: 16984682-16985181 Arabidopsis thaliana
AT5G42480 0.5kb downstream 0.5kb downstream 3759 true Chr5: 16985182-16988940 Arabidopsis thaliana
AT5G42480 0.5kb downstream 0.5kb downstream 500 false Chr5: 16988441-16988940 Arabidopsis thaliana
AT5G42480 1.0kb upstream 1.0kb upstream 4259 true Chr5: 16984182-16988440 Arabidopsis thaliana
AT5G42480 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16984182-16985181 Arabidopsis thaliana
AT5G42480 1.0kb downstream 1.0kb downstream 4259 true Chr5: 16985182-16989440 Arabidopsis thaliana
AT5G42480 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16988441-16989440 Arabidopsis thaliana
AT5G42480 2.0kb upstream 2.0kb upstream 5259 true Chr5: 16983182-16988440 Arabidopsis thaliana
AT5G42480 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16983182-16985181 Arabidopsis thaliana
AT5G42480 2.0kb downstream 2.0kb downstream 5259 true Chr5: 16985182-16990440 Arabidopsis thaliana
AT5G42480 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16988441-16990440 Arabidopsis thaliana
AT5G42480 5.0kb upstream 5.0kb upstream 8259 true Chr5: 16980182-16988440 Arabidopsis thaliana
AT5G42480 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16980182-16985181 Arabidopsis thaliana
AT5G42480 5.0kb downstream 5.0kb downstream 8259 true Chr5: 16985182-16993440 Arabidopsis thaliana
AT5G42480 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16988441-16993440 Arabidopsis thaliana
AT5G42480 10.0kb upstream 10.0kb upstream 13259 true Chr5: 16975182-16988440 Arabidopsis thaliana
AT5G42480 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16975182-16985181 Arabidopsis thaliana
AT5G42480 10.0kb downstream 10.0kb downstream 13259 true Chr5: 16985182-16998440 Arabidopsis thaliana
AT5G42480 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16988441-16998440 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364289 5261 Brassicaceae View MSA
123830808 5264 Brassicales-Malvales View MSA
124345784 5266 SBM View MSA
124239566 5268 Malvidae View MSA
124061719 5270 Rosid View MSA
123739564 5271 Pentapetalae View MSA
122791761 5272 Eudicot View MSA
122043280 5273 Angiosperm View MSA
121351206 5274 Embryophyte View MSA
123426631 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.336        
cufflinks 7.172        
cufflinks 21.169       High
cufflinks 7.216        
cufflinks 19.433        
cufflinks 7.509        

0 Strain