Gene : BPC6 A. thaliana TAIR10
Primary Identifier:  ? AT5G42520 Defline:  (1 of 1) PTHR31421:SF2 - PROTEIN BASIC PENTACYSTEINE6
Genomic Order:  3582 Name:  ? AT5G42520
Secondary Identifier:  ? PAC:19668962
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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G42520 0.5kb upstream 0.5kb upstream 2849 true Chr5: 16999759-17002607 Arabidopsis thaliana
AT5G42520 0.5kb upstream 0.5kb upstream 500 false Chr5: 16999759-17000258 Arabidopsis thaliana
AT5G42520 0.5kb downstream 0.5kb downstream 2849 true Chr5: 17000259-17003107 Arabidopsis thaliana
AT5G42520 0.5kb downstream 0.5kb downstream 500 false Chr5: 17002608-17003107 Arabidopsis thaliana
AT5G42520 1.0kb upstream 1.0kb upstream 3349 true Chr5: 16999259-17002607 Arabidopsis thaliana
AT5G42520 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16999259-17000258 Arabidopsis thaliana
AT5G42520 1.0kb downstream 1.0kb downstream 3349 true Chr5: 17000259-17003607 Arabidopsis thaliana
AT5G42520 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17002608-17003607 Arabidopsis thaliana
AT5G42520 2.0kb upstream 2.0kb upstream 4349 true Chr5: 16998259-17002607 Arabidopsis thaliana
AT5G42520 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16998259-17000258 Arabidopsis thaliana
AT5G42520 2.0kb downstream 2.0kb downstream 4349 true Chr5: 17000259-17004607 Arabidopsis thaliana
AT5G42520 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17002608-17004607 Arabidopsis thaliana
AT5G42520 5.0kb upstream 5.0kb upstream 7349 true Chr5: 16995259-17002607 Arabidopsis thaliana
AT5G42520 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16995259-17000258 Arabidopsis thaliana
AT5G42520 5.0kb downstream 5.0kb downstream 7349 true Chr5: 17000259-17007607 Arabidopsis thaliana
AT5G42520 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17002608-17007607 Arabidopsis thaliana
AT5G42520 10.0kb upstream 10.0kb upstream 12349 true Chr5: 16990259-17002607 Arabidopsis thaliana
AT5G42520 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16990259-17000258 Arabidopsis thaliana
AT5G42520 10.0kb downstream 10.0kb downstream 12349 true Chr5: 17000259-17012607 Arabidopsis thaliana
AT5G42520 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17002608-17012607 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377117 5261 Brassicaceae View MSA
123832274 5264 Brassicales-Malvales View MSA
124346918 5266 SBM View MSA
124238071 5268 Malvidae View MSA
124066986 5270 Rosid View MSA
123743599 5271 Pentapetalae View MSA
122787998 5272 Eudicot View MSA
122045937 5273 Angiosperm View MSA
121350358 5274 Embryophyte View MSA
123381694 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.422       Low
cufflinks 7.595        
cufflinks 8.769        
cufflinks 7.748        
cufflinks 8.554        
cufflinks 6.324        

0 Strain