Gene : AT5G42510 A. thaliana TAIR10
Defline:  (1 of 5) PTHR21495//PTHR21495:SF71 - NUCLEOPORIN-RELATED // DIRIGENT PROTEIN 1-RELATED Genomic Order:  3581
Name:  ? AT5G42510 Secondary Identifier:  ? PAC:19668990
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G42510 0.5kb upstream 0.5kb upstream 1049 true Chr5: 16998268-16999316 Arabidopsis thaliana
AT5G42510 0.5kb upstream 0.5kb upstream 500 false Chr5: 16998817-16999316 Arabidopsis thaliana
AT5G42510 0.5kb downstream 0.5kb downstream 1049 true Chr5: 16997768-16998816 Arabidopsis thaliana
AT5G42510 0.5kb downstream 0.5kb downstream 500 false Chr5: 16997768-16998267 Arabidopsis thaliana
AT5G42510 1.0kb upstream 1.0kb upstream 1549 true Chr5: 16998268-16999816 Arabidopsis thaliana
AT5G42510 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16998817-16999816 Arabidopsis thaliana
AT5G42510 1.0kb downstream 1.0kb downstream 1549 true Chr5: 16997268-16998816 Arabidopsis thaliana
AT5G42510 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16997268-16998267 Arabidopsis thaliana
AT5G42510 2.0kb upstream 2.0kb upstream 2549 true Chr5: 16998268-17000816 Arabidopsis thaliana
AT5G42510 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16998817-17000816 Arabidopsis thaliana
AT5G42510 2.0kb downstream 2.0kb downstream 2549 true Chr5: 16996268-16998816 Arabidopsis thaliana
AT5G42510 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16996268-16998267 Arabidopsis thaliana
AT5G42510 5.0kb upstream 5.0kb upstream 5549 true Chr5: 16998268-17003816 Arabidopsis thaliana
AT5G42510 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16998817-17003816 Arabidopsis thaliana
AT5G42510 5.0kb downstream 5.0kb downstream 5549 true Chr5: 16993268-16998816 Arabidopsis thaliana
AT5G42510 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16993268-16998267 Arabidopsis thaliana
AT5G42510 10.0kb upstream 10.0kb upstream 10549 true Chr5: 16998268-17008816 Arabidopsis thaliana
AT5G42510 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16998817-17008816 Arabidopsis thaliana
AT5G42510 10.0kb downstream 10.0kb downstream 10549 true Chr5: 16988268-16998816 Arabidopsis thaliana
AT5G42510 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16988268-16998267 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122331170 5261 Brassicaceae Singleton cluster - no MSA
123772373 5264 Brassicales-Malvales Singleton cluster - no MSA
124270890 5266 SBM Singleton cluster - no MSA
124126935 5268 Malvidae Singleton cluster - no MSA
123855816 5270 Rosid Singleton cluster - no MSA
123441780 5271 Pentapetalae Singleton cluster - no MSA
122797233 5272 Eudicot View MSA
122051134 5273 Angiosperm View MSA
121351582 5274 Embryophyte View MSA
123382236 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.463       Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 4.591        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 5.915        

0 Strain