Gene : VAR1 A. thaliana TAIR10
Primary Identifier:  ? AT5G42270 Defline:  (1 of 2) PTHR23076//PTHR23076:SF33 - METALLOPROTEASE M41 FTSH // ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED
Genomic Order:  3554 Name:  ? AT5G42270
Secondary Identifier:  ? PAC:19671853
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G42270 0.5kb upstream 0.5kb upstream 3309 true Chr5: 16901986-16905294 Arabidopsis thaliana
AT5G42270 0.5kb upstream 0.5kb upstream 500 false Chr5: 16901986-16902485 Arabidopsis thaliana
AT5G42270 0.5kb downstream 0.5kb downstream 3309 true Chr5: 16902486-16905794 Arabidopsis thaliana
AT5G42270 0.5kb downstream 0.5kb downstream 500 false Chr5: 16905295-16905794 Arabidopsis thaliana
AT5G42270 1.0kb upstream 1.0kb upstream 3809 true Chr5: 16901486-16905294 Arabidopsis thaliana
AT5G42270 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16901486-16902485 Arabidopsis thaliana
AT5G42270 1.0kb downstream 1.0kb downstream 3809 true Chr5: 16902486-16906294 Arabidopsis thaliana
AT5G42270 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16905295-16906294 Arabidopsis thaliana
AT5G42270 2.0kb upstream 2.0kb upstream 4809 true Chr5: 16900486-16905294 Arabidopsis thaliana
AT5G42270 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16900486-16902485 Arabidopsis thaliana
AT5G42270 2.0kb downstream 2.0kb downstream 4809 true Chr5: 16902486-16907294 Arabidopsis thaliana
AT5G42270 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16905295-16907294 Arabidopsis thaliana
AT5G42270 5.0kb upstream 5.0kb upstream 7809 true Chr5: 16897486-16905294 Arabidopsis thaliana
AT5G42270 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16897486-16902485 Arabidopsis thaliana
AT5G42270 5.0kb downstream 5.0kb downstream 7809 true Chr5: 16902486-16910294 Arabidopsis thaliana
AT5G42270 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16905295-16910294 Arabidopsis thaliana
AT5G42270 10.0kb upstream 10.0kb upstream 12809 true Chr5: 16892486-16905294 Arabidopsis thaliana
AT5G42270 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16892486-16902485 Arabidopsis thaliana
AT5G42270 10.0kb downstream 10.0kb downstream 12809 true Chr5: 16902486-16915294 Arabidopsis thaliana
AT5G42270 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16905295-16915294 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377880 5261 Brassicaceae View MSA
123838553 5264 Brassicales-Malvales View MSA
124337875 5266 SBM View MSA
124238414 5268 Malvidae View MSA
124060614 5270 Rosid View MSA
123737451 5271 Pentapetalae View MSA
122792150 5272 Eudicot View MSA
122046642 5273 Angiosperm View MSA
121346512 5274 Embryophyte View MSA
123425128 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 197.168     High  
cufflinks 11.205        
cufflinks 289.121     High  
cufflinks 12.252        
cufflinks 274.666     High  
cufflinks 10.44        

0 Strain