Gene : AT5G42190 A. thaliana TAIR10
Defline:  (1 of 19) K03094 - S-phase kinase-associated protein 1 (SKP1, CBF3D) Genomic Order:  3541
Name:  ? AT5G42190 Secondary Identifier:  ? PAC:19670392
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G42190 0.5kb upstream 0.5kb upstream 1955 true Chr5: 16854191-16856145 Arabidopsis thaliana
AT5G42190 0.5kb upstream 0.5kb upstream 500 false Chr5: 16855646-16856145 Arabidopsis thaliana
AT5G42190 0.5kb downstream 0.5kb downstream 1955 true Chr5: 16853691-16855645 Arabidopsis thaliana
AT5G42190 0.5kb downstream 0.5kb downstream 500 false Chr5: 16853691-16854190 Arabidopsis thaliana
AT5G42190 1.0kb upstream 1.0kb upstream 2455 true Chr5: 16854191-16856645 Arabidopsis thaliana
AT5G42190 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16855646-16856645 Arabidopsis thaliana
AT5G42190 1.0kb downstream 1.0kb downstream 2455 true Chr5: 16853191-16855645 Arabidopsis thaliana
AT5G42190 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16853191-16854190 Arabidopsis thaliana
AT5G42190 2.0kb upstream 2.0kb upstream 3455 true Chr5: 16854191-16857645 Arabidopsis thaliana
AT5G42190 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16855646-16857645 Arabidopsis thaliana
AT5G42190 2.0kb downstream 2.0kb downstream 3455 true Chr5: 16852191-16855645 Arabidopsis thaliana
AT5G42190 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16852191-16854190 Arabidopsis thaliana
AT5G42190 5.0kb upstream 5.0kb upstream 6455 true Chr5: 16854191-16860645 Arabidopsis thaliana
AT5G42190 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16855646-16860645 Arabidopsis thaliana
AT5G42190 5.0kb downstream 5.0kb downstream 6455 true Chr5: 16849191-16855645 Arabidopsis thaliana
AT5G42190 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16849191-16854190 Arabidopsis thaliana
AT5G42190 10.0kb upstream 10.0kb upstream 11455 true Chr5: 16854191-16865645 Arabidopsis thaliana
AT5G42190 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16855646-16865645 Arabidopsis thaliana
AT5G42190 10.0kb downstream 10.0kb downstream 11455 true Chr5: 16844191-16855645 Arabidopsis thaliana
AT5G42190 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16844191-16854190 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343322 5261 Brassicaceae View MSA
123837692 5264 Brassicales-Malvales View MSA
124349678 5266 SBM View MSA
124250009 5268 Malvidae View MSA
124067462 5270 Rosid View MSA
123744391 5271 Pentapetalae View MSA
122796189 5272 Eudicot View MSA
122048755 5273 Angiosperm View MSA
121348588 5274 Embryophyte View MSA
123428431 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 46.726     High Low
cufflinks 66.762     High High
cufflinks 48.992     High  
cufflinks 64.505     High  
cufflinks 47.37     High  
cufflinks 64.309     High  

0 Strain