Gene : AT5G42090 A. thaliana TAIR10
Defline:  (1 of 1) PTHR21229//PTHR21229:SF22 - LUNG SEVEN TRANSMEMBRANE RECEPTOR // DBJ|BAA84809.1 Genomic Order:  3531
Name:  ? AT5G42090 Secondary Identifier:  ? PAC:19669274
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G42090 0.5kb upstream 0.5kb upstream 2257 true Chr5: 16826198-16828454 Arabidopsis thaliana
AT5G42090 0.5kb upstream 0.5kb upstream 500 false Chr5: 16826198-16826697 Arabidopsis thaliana
AT5G42090 0.5kb downstream 0.5kb downstream 2257 true Chr5: 16826698-16828954 Arabidopsis thaliana
AT5G42090 0.5kb downstream 0.5kb downstream 500 false Chr5: 16828455-16828954 Arabidopsis thaliana
AT5G42090 1.0kb upstream 1.0kb upstream 2757 true Chr5: 16825698-16828454 Arabidopsis thaliana
AT5G42090 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16825698-16826697 Arabidopsis thaliana
AT5G42090 1.0kb downstream 1.0kb downstream 2757 true Chr5: 16826698-16829454 Arabidopsis thaliana
AT5G42090 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16828455-16829454 Arabidopsis thaliana
AT5G42090 2.0kb upstream 2.0kb upstream 3757 true Chr5: 16824698-16828454 Arabidopsis thaliana
AT5G42090 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16824698-16826697 Arabidopsis thaliana
AT5G42090 2.0kb downstream 2.0kb downstream 3757 true Chr5: 16826698-16830454 Arabidopsis thaliana
AT5G42090 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16828455-16830454 Arabidopsis thaliana
AT5G42090 5.0kb upstream 5.0kb upstream 6757 true Chr5: 16821698-16828454 Arabidopsis thaliana
AT5G42090 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16821698-16826697 Arabidopsis thaliana
AT5G42090 5.0kb downstream 5.0kb downstream 6757 true Chr5: 16826698-16833454 Arabidopsis thaliana
AT5G42090 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16828455-16833454 Arabidopsis thaliana
AT5G42090 10.0kb upstream 10.0kb upstream 11757 true Chr5: 16816698-16828454 Arabidopsis thaliana
AT5G42090 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16816698-16826697 Arabidopsis thaliana
AT5G42090 10.0kb downstream 10.0kb downstream 11757 true Chr5: 16826698-16838454 Arabidopsis thaliana
AT5G42090 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16828455-16838454 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362902 5261 Brassicaceae View MSA
123838424 5264 Brassicales-Malvales View MSA
124337235 5266 SBM View MSA
124242088 5268 Malvidae View MSA
124066624 5270 Rosid View MSA
123738236 5271 Pentapetalae View MSA
122786634 5272 Eudicot View MSA
122048893 5273 Angiosperm View MSA
121346651 5274 Embryophyte View MSA
123428278 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 61.887     High  
cufflinks 74.235     High  
cufflinks 48.758     High Low
cufflinks 78.935     High High
cufflinks 57.897     High  
cufflinks 72.747     High  

0 Strain