Gene : AT5G42140 A. thaliana TAIR10
Defline:  (1 of 2) PTHR22870:SF91 - REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-RELATED Genomic Order:  3536
Name:  ? AT5G42140 Secondary Identifier:  ? PAC:19671200
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G42140 0.5kb upstream 0.5kb upstream 4801 true Chr5: 16837340-16842140 Arabidopsis thaliana
AT5G42140 0.5kb upstream 0.5kb upstream 500 false Chr5: 16841641-16842140 Arabidopsis thaliana
AT5G42140 0.5kb downstream 0.5kb downstream 4801 true Chr5: 16836840-16841640 Arabidopsis thaliana
AT5G42140 0.5kb downstream 0.5kb downstream 500 false Chr5: 16836840-16837339 Arabidopsis thaliana
AT5G42140 1.0kb upstream 1.0kb upstream 5301 true Chr5: 16837340-16842640 Arabidopsis thaliana
AT5G42140 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16841641-16842640 Arabidopsis thaliana
AT5G42140 1.0kb downstream 1.0kb downstream 5301 true Chr5: 16836340-16841640 Arabidopsis thaliana
AT5G42140 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16836340-16837339 Arabidopsis thaliana
AT5G42140 2.0kb upstream 2.0kb upstream 6301 true Chr5: 16837340-16843640 Arabidopsis thaliana
AT5G42140 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16841641-16843640 Arabidopsis thaliana
AT5G42140 2.0kb downstream 2.0kb downstream 6301 true Chr5: 16835340-16841640 Arabidopsis thaliana
AT5G42140 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16835340-16837339 Arabidopsis thaliana
AT5G42140 5.0kb upstream 5.0kb upstream 9301 true Chr5: 16837340-16846640 Arabidopsis thaliana
AT5G42140 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16841641-16846640 Arabidopsis thaliana
AT5G42140 5.0kb downstream 5.0kb downstream 9301 true Chr5: 16832340-16841640 Arabidopsis thaliana
AT5G42140 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16832340-16837339 Arabidopsis thaliana
AT5G42140 10.0kb upstream 10.0kb upstream 14301 true Chr5: 16837340-16851640 Arabidopsis thaliana
AT5G42140 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16841641-16851640 Arabidopsis thaliana
AT5G42140 10.0kb downstream 10.0kb downstream 14301 true Chr5: 16827340-16841640 Arabidopsis thaliana
AT5G42140 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16827340-16837339 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363018 5261 Brassicaceae View MSA
123838418 5264 Brassicales-Malvales View MSA
124343876 5266 SBM View MSA
124241778 5268 Malvidae View MSA
124064064 5270 Rosid View MSA
123743223 5271 Pentapetalae View MSA
122785738 5272 Eudicot View MSA
122045516 5273 Angiosperm View MSA
121310458 5274 Embryophyte View MSA
123428657 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.052       High
cufflinks 5.732        
cufflinks 4.39       Low
cufflinks 5.498        
cufflinks 5.823        
cufflinks 5.179        

0 Strain