Gene : AT5G41970 A. thaliana TAIR10
Defline:  (1 of 2) PTHR11215//PTHR11215:SF3 - METAL DEPENDENT HYDROLASE - RELATED // SUBFAMILY NOT NAMED Genomic Order:  3517
Name:  ? AT5G41970 Secondary Identifier:  ? PAC:19665813
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G41970 0.5kb upstream 0.5kb upstream 2576 true Chr5: 16790682-16793257 Arabidopsis thaliana
AT5G41970 0.5kb upstream 0.5kb upstream 500 false Chr5: 16790682-16791181 Arabidopsis thaliana
AT5G41970 0.5kb downstream 0.5kb downstream 2576 true Chr5: 16791182-16793757 Arabidopsis thaliana
AT5G41970 0.5kb downstream 0.5kb downstream 500 false Chr5: 16793258-16793757 Arabidopsis thaliana
AT5G41970 1.0kb upstream 1.0kb upstream 3076 true Chr5: 16790182-16793257 Arabidopsis thaliana
AT5G41970 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16790182-16791181 Arabidopsis thaliana
AT5G41970 1.0kb downstream 1.0kb downstream 3076 true Chr5: 16791182-16794257 Arabidopsis thaliana
AT5G41970 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16793258-16794257 Arabidopsis thaliana
AT5G41970 2.0kb upstream 2.0kb upstream 4076 true Chr5: 16789182-16793257 Arabidopsis thaliana
AT5G41970 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16789182-16791181 Arabidopsis thaliana
AT5G41970 2.0kb downstream 2.0kb downstream 4076 true Chr5: 16791182-16795257 Arabidopsis thaliana
AT5G41970 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16793258-16795257 Arabidopsis thaliana
AT5G41970 5.0kb upstream 5.0kb upstream 7076 true Chr5: 16786182-16793257 Arabidopsis thaliana
AT5G41970 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16786182-16791181 Arabidopsis thaliana
AT5G41970 5.0kb downstream 5.0kb downstream 7076 true Chr5: 16791182-16798257 Arabidopsis thaliana
AT5G41970 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16793258-16798257 Arabidopsis thaliana
AT5G41970 10.0kb upstream 10.0kb upstream 12076 true Chr5: 16781182-16793257 Arabidopsis thaliana
AT5G41970 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16781182-16791181 Arabidopsis thaliana
AT5G41970 10.0kb downstream 10.0kb downstream 12076 true Chr5: 16791182-16803257 Arabidopsis thaliana
AT5G41970 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16793258-16803257 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362755 5261 Brassicaceae View MSA
123827708 5264 Brassicales-Malvales View MSA
124338250 5266 SBM View MSA
124243964 5268 Malvidae View MSA
124060891 5270 Rosid View MSA
123741833 5271 Pentapetalae View MSA
122789735 5272 Eudicot View MSA
122041582 5273 Angiosperm View MSA
121346472 5274 Embryophyte View MSA
123423927 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.021        
cufflinks 21.753        
cufflinks 17.503       Low
cufflinks 22.087        
cufflinks 16.694       Low
cufflinks 23.884       High

0 Strain