Gene : AT5G41560 A. thaliana TAIR10
Defline:  (1 of 1) PTHR31879:SF2 - DET1- AND DDB1-ASSOCIATED PROTEIN 1 Genomic Order:  3472
Name:  ? AT5G41560 Secondary Identifier:  ? PAC:19671311
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G41560 0.5kb upstream 0.5kb upstream 1906 true Chr5: 16621251-16623156 Arabidopsis thaliana
AT5G41560 0.5kb upstream 0.5kb upstream 500 false Chr5: 16622657-16623156 Arabidopsis thaliana
AT5G41560 0.5kb downstream 0.5kb downstream 1906 true Chr5: 16620751-16622656 Arabidopsis thaliana
AT5G41560 0.5kb downstream 0.5kb downstream 500 false Chr5: 16620751-16621250 Arabidopsis thaliana
AT5G41560 1.0kb upstream 1.0kb upstream 2406 true Chr5: 16621251-16623656 Arabidopsis thaliana
AT5G41560 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16622657-16623656 Arabidopsis thaliana
AT5G41560 1.0kb downstream 1.0kb downstream 2406 true Chr5: 16620251-16622656 Arabidopsis thaliana
AT5G41560 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16620251-16621250 Arabidopsis thaliana
AT5G41560 2.0kb upstream 2.0kb upstream 3406 true Chr5: 16621251-16624656 Arabidopsis thaliana
AT5G41560 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16622657-16624656 Arabidopsis thaliana
AT5G41560 2.0kb downstream 2.0kb downstream 3406 true Chr5: 16619251-16622656 Arabidopsis thaliana
AT5G41560 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16619251-16621250 Arabidopsis thaliana
AT5G41560 5.0kb upstream 5.0kb upstream 6406 true Chr5: 16621251-16627656 Arabidopsis thaliana
AT5G41560 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16622657-16627656 Arabidopsis thaliana
AT5G41560 5.0kb downstream 5.0kb downstream 6406 true Chr5: 16616251-16622656 Arabidopsis thaliana
AT5G41560 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16616251-16621250 Arabidopsis thaliana
AT5G41560 10.0kb upstream 10.0kb upstream 11406 true Chr5: 16621251-16632656 Arabidopsis thaliana
AT5G41560 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16622657-16632656 Arabidopsis thaliana
AT5G41560 10.0kb downstream 10.0kb downstream 11406 true Chr5: 16611251-16622656 Arabidopsis thaliana
AT5G41560 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16611251-16621250 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374086 5261 Brassicaceae View MSA
123836096 5264 Brassicales-Malvales View MSA
124340080 5266 SBM View MSA
124242296 5268 Malvidae View MSA
124063668 5270 Rosid View MSA
123750714 5271 Pentapetalae View MSA
122790352 5272 Eudicot View MSA
122042926 5273 Angiosperm View MSA
121310044 5274 Embryophyte View MSA
123347643 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.747        
cufflinks 9.309       High
cufflinks 7.252       Low
cufflinks 8.574        
cufflinks 7.575        
cufflinks 8.983        

0 Strain