Gene : AT5G41620 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31071:SF9 - INTRACELLULAR PROTEIN TRANSPORT PROTEIN USO1-LIKE PROTEIN Genomic Order:  3479
Name:  ? AT5G41620 Secondary Identifier:  ? PAC:19672725
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G41620 0.5kb upstream 0.5kb upstream 3139 true Chr5: 16645830-16648968 Arabidopsis thaliana
AT5G41620 0.5kb upstream 0.5kb upstream 500 false Chr5: 16645830-16646329 Arabidopsis thaliana
AT5G41620 0.5kb downstream 0.5kb downstream 3139 true Chr5: 16646330-16649468 Arabidopsis thaliana
AT5G41620 0.5kb downstream 0.5kb downstream 500 false Chr5: 16648969-16649468 Arabidopsis thaliana
AT5G41620 1.0kb upstream 1.0kb upstream 3639 true Chr5: 16645330-16648968 Arabidopsis thaliana
AT5G41620 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16645330-16646329 Arabidopsis thaliana
AT5G41620 1.0kb downstream 1.0kb downstream 3639 true Chr5: 16646330-16649968 Arabidopsis thaliana
AT5G41620 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16648969-16649968 Arabidopsis thaliana
AT5G41620 2.0kb upstream 2.0kb upstream 4639 true Chr5: 16644330-16648968 Arabidopsis thaliana
AT5G41620 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16644330-16646329 Arabidopsis thaliana
AT5G41620 2.0kb downstream 2.0kb downstream 4639 true Chr5: 16646330-16650968 Arabidopsis thaliana
AT5G41620 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16648969-16650968 Arabidopsis thaliana
AT5G41620 5.0kb upstream 5.0kb upstream 7639 true Chr5: 16641330-16648968 Arabidopsis thaliana
AT5G41620 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16641330-16646329 Arabidopsis thaliana
AT5G41620 5.0kb downstream 5.0kb downstream 7639 true Chr5: 16646330-16653968 Arabidopsis thaliana
AT5G41620 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16648969-16653968 Arabidopsis thaliana
AT5G41620 10.0kb upstream 10.0kb upstream 12639 true Chr5: 16636330-16648968 Arabidopsis thaliana
AT5G41620 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16636330-16646329 Arabidopsis thaliana
AT5G41620 10.0kb downstream 10.0kb downstream 12639 true Chr5: 16646330-16658968 Arabidopsis thaliana
AT5G41620 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16648969-16658968 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376488 5261 Brassicaceae View MSA
123828881 5264 Brassicales-Malvales View MSA
124346118 5266 SBM View MSA
124244128 5268 Malvidae View MSA
124072871 5270 Rosid View MSA
123736575 5271 Pentapetalae View MSA
122797498 5272 Eudicot View MSA
122044970 5273 Angiosperm View MSA
121310375 5274 Embryophyte View MSA
123347876 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.351        
cufflinks 11.761        
cufflinks 1.775        
cufflinks 9.059        
cufflinks 1.271       Low
cufflinks 13.261       High

0 Strain