Gene : AT5G41330 A. thaliana TAIR10
Defline:  (1 of 2) PTHR11145 - TUMOR NECROSIS FACTOR-RELATED Genomic Order:  3448
Name:  ? AT5G41330 Secondary Identifier:  ? PAC:19668977
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G41330 0.5kb upstream 0.5kb upstream 3065 true Chr5: 16535339-16538403 Arabidopsis thaliana
AT5G41330 0.5kb upstream 0.5kb upstream 500 false Chr5: 16537904-16538403 Arabidopsis thaliana
AT5G41330 0.5kb downstream 0.5kb downstream 3065 true Chr5: 16534839-16537903 Arabidopsis thaliana
AT5G41330 0.5kb downstream 0.5kb downstream 500 false Chr5: 16534839-16535338 Arabidopsis thaliana
AT5G41330 1.0kb upstream 1.0kb upstream 3565 true Chr5: 16535339-16538903 Arabidopsis thaliana
AT5G41330 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16537904-16538903 Arabidopsis thaliana
AT5G41330 1.0kb downstream 1.0kb downstream 3565 true Chr5: 16534339-16537903 Arabidopsis thaliana
AT5G41330 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16534339-16535338 Arabidopsis thaliana
AT5G41330 2.0kb upstream 2.0kb upstream 4565 true Chr5: 16535339-16539903 Arabidopsis thaliana
AT5G41330 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16537904-16539903 Arabidopsis thaliana
AT5G41330 2.0kb downstream 2.0kb downstream 4565 true Chr5: 16533339-16537903 Arabidopsis thaliana
AT5G41330 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16533339-16535338 Arabidopsis thaliana
AT5G41330 5.0kb upstream 5.0kb upstream 7565 true Chr5: 16535339-16542903 Arabidopsis thaliana
AT5G41330 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16537904-16542903 Arabidopsis thaliana
AT5G41330 5.0kb downstream 5.0kb downstream 7565 true Chr5: 16530339-16537903 Arabidopsis thaliana
AT5G41330 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16530339-16535338 Arabidopsis thaliana
AT5G41330 10.0kb upstream 10.0kb upstream 12565 true Chr5: 16535339-16547903 Arabidopsis thaliana
AT5G41330 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16537904-16547903 Arabidopsis thaliana
AT5G41330 10.0kb downstream 10.0kb downstream 12565 true Chr5: 16525339-16537903 Arabidopsis thaliana
AT5G41330 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16525339-16535338 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363305 5261 Brassicaceae View MSA
123833657 5264 Brassicales-Malvales View MSA
124338039 5266 SBM View MSA
124242309 5268 Malvidae View MSA
124060798 5270 Rosid View MSA
123737631 5271 Pentapetalae View MSA
122791240 5272 Eudicot View MSA
122042173 5273 Angiosperm View MSA
121348328 5274 Embryophyte View MSA
123380822 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.879        
cufflinks 9.472        
cufflinks 8.3       Low
cufflinks 9.928       High
cufflinks 9.066        
cufflinks 8.386       Low

0 Strain