Gene : AT5G41140 A. thaliana TAIR10
Defline:  (1 of 1) KOG4421//KOG4593//KOG4809 - Uncharacterized conserved protein // Mitotic checkpoint protein MAD1 // Rab6 GTPase-interacting protein involved in endosome-to-TGN transport Genomic Order:  3429
Name:  ? AT5G41140 Secondary Identifier:  ? PAC:19670971
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G41140 0.5kb upstream 0.5kb upstream 4877 true Chr5: 16467934-16472810 Arabidopsis thaliana
AT5G41140 0.5kb upstream 0.5kb upstream 500 false Chr5: 16467934-16468433 Arabidopsis thaliana
AT5G41140 0.5kb downstream 0.5kb downstream 4877 true Chr5: 16468434-16473310 Arabidopsis thaliana
AT5G41140 0.5kb downstream 0.5kb downstream 500 false Chr5: 16472811-16473310 Arabidopsis thaliana
AT5G41140 1.0kb upstream 1.0kb upstream 5377 true Chr5: 16467434-16472810 Arabidopsis thaliana
AT5G41140 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16467434-16468433 Arabidopsis thaliana
AT5G41140 1.0kb downstream 1.0kb downstream 5377 true Chr5: 16468434-16473810 Arabidopsis thaliana
AT5G41140 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16472811-16473810 Arabidopsis thaliana
AT5G41140 2.0kb upstream 2.0kb upstream 6377 true Chr5: 16466434-16472810 Arabidopsis thaliana
AT5G41140 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16466434-16468433 Arabidopsis thaliana
AT5G41140 2.0kb downstream 2.0kb downstream 6377 true Chr5: 16468434-16474810 Arabidopsis thaliana
AT5G41140 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16472811-16474810 Arabidopsis thaliana
AT5G41140 5.0kb upstream 5.0kb upstream 9377 true Chr5: 16463434-16472810 Arabidopsis thaliana
AT5G41140 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16463434-16468433 Arabidopsis thaliana
AT5G41140 5.0kb downstream 5.0kb downstream 9377 true Chr5: 16468434-16477810 Arabidopsis thaliana
AT5G41140 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16472811-16477810 Arabidopsis thaliana
AT5G41140 10.0kb upstream 10.0kb upstream 14377 true Chr5: 16458434-16472810 Arabidopsis thaliana
AT5G41140 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16458434-16468433 Arabidopsis thaliana
AT5G41140 10.0kb downstream 10.0kb downstream 14377 true Chr5: 16468434-16482810 Arabidopsis thaliana
AT5G41140 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16472811-16482810 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040955 5273 Angiosperm View MSA
122365031 5261 Brassicaceae View MSA
123798880 5264 Brassicales-Malvales View MSA
124296458 5266 SBM View MSA
124148604 5268 Malvidae View MSA
123874567 5270 Rosid View MSA
123747619 5271 Pentapetalae View MSA
122785648 5272 Eudicot View MSA
121348283 5274 Embryophyte View MSA
123428094 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.158        
cufflinks 13.139        
cufflinks 5.593        
cufflinks 11.912        
cufflinks 4.385       Low
cufflinks 15.804       High

0 Strain