Gene : AT5G41080 A. thaliana TAIR10
Defline:  (1 of 3) PTHR22958 - RELATED TO MULTIFUNCTIONAL CYCLIN-DEPENDENT KINASE-RELATED Genomic Order:  3422
Name:  ? AT5G41080 Secondary Identifier:  ? PAC:19666298
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7409 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G41080 0.5kb upstream 0.5kb upstream 2742 true Chr5: 16441244-16443985 Arabidopsis thaliana
AT5G41080 0.5kb upstream 0.5kb upstream 500 false Chr5: 16441244-16441743 Arabidopsis thaliana
AT5G41080 0.5kb downstream 0.5kb downstream 2742 true Chr5: 16441744-16444485 Arabidopsis thaliana
AT5G41080 0.5kb downstream 0.5kb downstream 500 false Chr5: 16443986-16444485 Arabidopsis thaliana
AT5G41080 1.0kb upstream 1.0kb upstream 3242 true Chr5: 16440744-16443985 Arabidopsis thaliana
AT5G41080 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16440744-16441743 Arabidopsis thaliana
AT5G41080 1.0kb downstream 1.0kb downstream 3242 true Chr5: 16441744-16444985 Arabidopsis thaliana
AT5G41080 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16443986-16444985 Arabidopsis thaliana
AT5G41080 2.0kb upstream 2.0kb upstream 4242 true Chr5: 16439744-16443985 Arabidopsis thaliana
AT5G41080 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16439744-16441743 Arabidopsis thaliana
AT5G41080 2.0kb downstream 2.0kb downstream 4242 true Chr5: 16441744-16445985 Arabidopsis thaliana
AT5G41080 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16443986-16445985 Arabidopsis thaliana
AT5G41080 5.0kb upstream 5.0kb upstream 7242 true Chr5: 16436744-16443985 Arabidopsis thaliana
AT5G41080 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16436744-16441743 Arabidopsis thaliana
AT5G41080 5.0kb downstream 5.0kb downstream 7242 true Chr5: 16441744-16448985 Arabidopsis thaliana
AT5G41080 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16443986-16448985 Arabidopsis thaliana
AT5G41080 10.0kb upstream 10.0kb upstream 12242 true Chr5: 16431744-16443985 Arabidopsis thaliana
AT5G41080 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16431744-16441743 Arabidopsis thaliana
AT5G41080 10.0kb downstream 10.0kb downstream 12242 true Chr5: 16441744-16453985 Arabidopsis thaliana
AT5G41080 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16443986-16453985 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368993 5261 Brassicaceae View MSA
123835487 5264 Brassicales-Malvales View MSA
124344665 5266 SBM View MSA
124241835 5268 Malvidae View MSA
124061508 5270 Rosid View MSA
123747785 5271 Pentapetalae View MSA
122794114 5272 Eudicot View MSA
122041847 5273 Angiosperm View MSA
123429151 5275 Viridiplantae View MSA
121351088 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.792       Low
cufflinks 27.743        
cufflinks 5.494        
cufflinks 19.096        
cufflinks 2.192        
cufflinks 23.3        

0 Strain