Gene : CLC-A A. thaliana TAIR10
Primary Identifier:  ? AT5G40890 Defline:  (1 of 2) PTHR11689//PTHR11689:SF67 - CHLORIDE CHANNEL // CHLORIDE CHANNEL PROTEIN CLC-A-RELATED
Genomic Order:  3402 Name:  ? AT5G40890
Secondary Identifier:  ? PAC:19672406
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0 Pathways

Genomics

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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G40890 0.5kb upstream 0.5kb upstream 4506 true Chr5: 16381314-16385819 Arabidopsis thaliana
AT5G40890 0.5kb upstream 0.5kb upstream 500 false Chr5: 16385320-16385819 Arabidopsis thaliana
AT5G40890 0.5kb downstream 0.5kb downstream 4506 true Chr5: 16380814-16385319 Arabidopsis thaliana
AT5G40890 0.5kb downstream 0.5kb downstream 500 false Chr5: 16380814-16381313 Arabidopsis thaliana
AT5G40890 1.0kb upstream 1.0kb upstream 5006 true Chr5: 16381314-16386319 Arabidopsis thaliana
AT5G40890 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16385320-16386319 Arabidopsis thaliana
AT5G40890 1.0kb downstream 1.0kb downstream 5006 true Chr5: 16380314-16385319 Arabidopsis thaliana
AT5G40890 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16380314-16381313 Arabidopsis thaliana
AT5G40890 2.0kb upstream 2.0kb upstream 6006 true Chr5: 16381314-16387319 Arabidopsis thaliana
AT5G40890 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16385320-16387319 Arabidopsis thaliana
AT5G40890 2.0kb downstream 2.0kb downstream 6006 true Chr5: 16379314-16385319 Arabidopsis thaliana
AT5G40890 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16379314-16381313 Arabidopsis thaliana
AT5G40890 5.0kb upstream 5.0kb upstream 9006 true Chr5: 16381314-16390319 Arabidopsis thaliana
AT5G40890 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16385320-16390319 Arabidopsis thaliana
AT5G40890 5.0kb downstream 5.0kb downstream 9006 true Chr5: 16376314-16385319 Arabidopsis thaliana
AT5G40890 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16376314-16381313 Arabidopsis thaliana
AT5G40890 10.0kb upstream 10.0kb upstream 14006 true Chr5: 16381314-16395319 Arabidopsis thaliana
AT5G40890 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16385320-16395319 Arabidopsis thaliana
AT5G40890 10.0kb downstream 10.0kb downstream 14006 true Chr5: 16371314-16385319 Arabidopsis thaliana
AT5G40890 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16371314-16381313 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376257 5261 Brassicaceae View MSA
123801190 5264 Brassicales-Malvales View MSA
124298523 5266 SBM View MSA
124150148 5268 Malvidae View MSA
123875818 5270 Rosid View MSA
123741834 5271 Pentapetalae View MSA
122788464 5272 Eudicot View MSA
122042930 5273 Angiosperm View MSA
121310046 5274 Embryophyte View MSA
123428433 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 43.346     High High
cufflinks 12.862        
cufflinks 16.168        
cufflinks 14.863        
cufflinks 16.196        
cufflinks 19.497        

0 Strain