Gene : AT5G40900 A. thaliana TAIR10
Defline:  (1 of 6) PTHR24015//PTHR24015:SF419 - FAMILY NOT NAMED // NUCLEOTIDE-DIPHOSPHO-SUGAR TRANSFERASE DOMAIN-CONTAINING PROTEIN-RELATED Genomic Order:  3403
Name:  ? AT5G40900 Secondary Identifier:  ? PAC:19667390
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G40900 0.5kb upstream 0.5kb upstream 2040 true Chr5: 16391336-16393375 Arabidopsis thaliana
AT5G40900 0.5kb upstream 0.5kb upstream 500 false Chr5: 16391336-16391835 Arabidopsis thaliana
AT5G40900 0.5kb downstream 0.5kb downstream 2040 true Chr5: 16391836-16393875 Arabidopsis thaliana
AT5G40900 0.5kb downstream 0.5kb downstream 500 false Chr5: 16393376-16393875 Arabidopsis thaliana
AT5G40900 1.0kb upstream 1.0kb upstream 2540 true Chr5: 16390836-16393375 Arabidopsis thaliana
AT5G40900 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16390836-16391835 Arabidopsis thaliana
AT5G40900 1.0kb downstream 1.0kb downstream 2540 true Chr5: 16391836-16394375 Arabidopsis thaliana
AT5G40900 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16393376-16394375 Arabidopsis thaliana
AT5G40900 2.0kb upstream 2.0kb upstream 3540 true Chr5: 16389836-16393375 Arabidopsis thaliana
AT5G40900 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16389836-16391835 Arabidopsis thaliana
AT5G40900 2.0kb downstream 2.0kb downstream 3540 true Chr5: 16391836-16395375 Arabidopsis thaliana
AT5G40900 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16393376-16395375 Arabidopsis thaliana
AT5G40900 5.0kb upstream 5.0kb upstream 6540 true Chr5: 16386836-16393375 Arabidopsis thaliana
AT5G40900 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16386836-16391835 Arabidopsis thaliana
AT5G40900 5.0kb downstream 5.0kb downstream 6540 true Chr5: 16391836-16398375 Arabidopsis thaliana
AT5G40900 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16393376-16398375 Arabidopsis thaliana
AT5G40900 10.0kb upstream 10.0kb upstream 11540 true Chr5: 16381836-16393375 Arabidopsis thaliana
AT5G40900 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16381836-16391835 Arabidopsis thaliana
AT5G40900 10.0kb downstream 10.0kb downstream 11540 true Chr5: 16391836-16403375 Arabidopsis thaliana
AT5G40900 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16393376-16403375 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378703 5261 Brassicaceae View MSA
123801961 5264 Brassicales-Malvales View MSA
124346915 5266 SBM View MSA
124180927 5268 Malvidae View MSA
124072504 5270 Rosid View MSA
123743110 5271 Pentapetalae View MSA
122789265 5272 Eudicot View MSA
122042337 5273 Angiosperm View MSA
121347291 5274 Embryophyte View MSA
123428374 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.028     Low Low
cufflinks 0.127     Low  
cufflinks 0.08     Low  
cufflinks 0.259     Low High
cufflinks 0.035     Low  
cufflinks 0.063     Low  

0 Strain